| Literature DB >> 31333781 |
Meng Li1, Xinyu Liu1, Na Liu2, Tian Yang1, Puyu Shi1, Ruiqing He1, Mingwei Chen1.
Abstract
Purpose: The aim of this meta-analysis was to investigate polymorphism of Bsm1, Apal, Taq1 and Cdx-2 in vitamin D receptor (VDR) associations in relation to lung cancer (LC) susceptibility.Entities:
Keywords: Lung cancer; Meta-analysis; Polymorphism; VDR; Vitamin D receptor; risk
Year: 2019 PMID: 31333781 PMCID: PMC6636285 DOI: 10.7150/jca.33431
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Characteristics of the studies evaluating the effects of VDR gene polymorphism on LC risk
| Control | Quality score | Case | Control | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | Author | Year | Country | Ethnicity | Method | Case | Control | AA | Aa | aa | AA | Aa | aa | HWE | ||
| Bsm1 | Dogan | 2009 | Turkey | Caucasian | PCR-RFLP | Healthy | 7 | 137 | 156 | 57 | 60 | 20 | 45 | 86 | 25 | p > 0.05 |
| Cai | 2012 | China | Asian | PCR-RFLP | Healthy | 8 | 140 | 132 | 130 | 10 | 0 | 117 | 14 | 1 | p > 0.05 | |
| Yang | 2013 | China | Asian | PCR-RFLP | Healthy | 7 | 144 | 142 | 134 | 10 | 0 | 124 | 18 | 0 | p > 0.05 | |
| Kaabachi | 2014 | Tunisian | Caucasian | PCR-RFLP | Healthy | 7 | 240 | 280 | 74 | 126 | 40 | 84 | 150 | 46 | p > 0.05 | |
| Wu | 2016 | China | Asian | PCR-RFLP | Healthy | 8 | 426 | 445 | 403 | 17 | 6 | 373 | 49 | 23 | p < 0.05 | |
| Bi | 2016 | China | Asian | PCR-RFLP | Healthy | 8 | 50 | 50 | 46 | 4 | 0 | 30 | 18 | 2 | p > 0.05 | |
| Gromowski | 2017 | Polish | Caucasian | PCR-TaqMan | Healthy | 8 | 840 | 920 | 330 | 388 | 92 | 384 | 410 | 122 | p > 0.05 | |
| Hülya Kanbur | 2018 | Turkey | Caucasian | PCR-TaqMan | Healthy | 6 | 59 | 55 | 37 | 19 | 3 | 29 | 23 | 3 | p > 0.05 | |
| Apal | Dogan | 2009 | Turkey | Caucasian | PCR-RFLP | Healthy | 7 | 137 | 156 | 44 | 64 | 29 | 58 | 76 | 22 | p > 0.05 |
| Yang | 2013 | China | Asian | PCR-RFLP | Healthy | 7 | 144 | 142 | 76 | 63 | 5 | 74 | 60 | 8 | p > 0.05 | |
| Kaabachi | 2014 | Tunisian | Caucasian | PCR-RFLP | Healthy | 7 | 240 | 280 | 101 | 118 | 21 | 100 | 134 | 46 | p > 0.05 | |
| Wu | 2016 | China | Asian | PCR-RFLP | Healthy | 8 | 426 | 445 | 140 | 191 | 95 | 142 | 214 | 89 | p > 0.05 | |
| Bi | 2016 | China | Asian | PCR-RFLP | Healthy | 8 | 50 | 50 | 27 | 22 | 1 | 12 | 36 | 2 | p < 0.05 | |
| Yang | 2017 | China | Asian | PCR-RFLP | Healthy | 7 | 288 | 284 | 142 | 116 | 30 | 150 | 87 | 47 | p < 0.05 | |
| Gromowski | 2017 | Polish | Caucasian | PCR-TaqMan | Healthy | 8 | 840 | 920 | 236 | 412 | 175 | 235 | 500 | 184 | p < 0.05 | |
| Taq1 | Dogan | 2009 | Turkey | Caucasian | PCR-RFLP | Healthy | 7 | 137 | 156 | 64 | 59 | 14 | 49 | 83 | 24 | p > 0.05 |
| Yang | 2013 | China | Asian | PCR-RFLP | Healthy | 7 | 144 | 142 | 135 | 9 | 0 | 129 | 12 | 1 | p > 0.05 | |
| Kaabachi | 2014 | Tunisian | Caucasian | PCR-RFLP | Healthy | 7 | 240 | 280 | 90 | 118 | 32 | 98 | 146 | 36 | p > 0.05 | |
| Wu | 2016 | China | Asian | PCR-RFLP | Healthy | 8 | 426 | 445 | 409 | 14 | 3 | 416 | 27 | 2 | p > 0.05 | |
| Yang | 2017 | China | Asian | PCR-RFLP | Healthy | 7 | 288 | 284 | 258 | 27 | 3 | 240 | 38 | 6 | p < 0.05 | |
| Gromowski | 2017 | Polish | Caucasian | PCR-TaqMan | Healthy | 8 | 840 | 920 | 340 | 390 | 95 | 375 | 423 | 122 | p > 0.05 | |
| Cdx-2 | Wu | 2016 | China | Asian | PCR-RFLP | Healthy | 8 | 426 | 445 | 63 | 324 | 39 | 52 | 360 | 33 | p < 0.05 |
| Gromowski | 2017 | Polish | Caucasian | PCR-TaqMan | Healthy | 8 | 840 | 920 | 649 | 170 | 3 | 653 | 207 | 11 | p > 0.05 | |
HWE, Hardy-Weinberg equilibrium; P value >0.05 showed that SNPs were in HWE
Quality assessment conducted according to the NOS for all selected studies
| First author and year | Quality indicators | |||
|---|---|---|---|---|
| Selection | Comparability | Exposure | Quality score | |
| Dogan, 2009 | *** | * | ** | 7 |
| Cai, 2012 | **** | * | ** | 8 |
| Yang, 2013 | *** | * | ** | 7 |
| Kaabachi, 2014 | *** | * | ** | 7 |
| Wu, 2016 | **** | * | ** | 8 |
| Bi, 2016 | **** | * | ** | 8 |
| Yang, 2017 | *** | * | ** | 7 |
| Gromowski, 2017 | **** | * | ** | 8 |
| Hülya Kanbur, 2018 | ** | * | ** | 6 |
*indicates points of score
Meta-analysis and publication bias between VDR gene polymorphisms and LC
| Test of association | Test of heterogeneity | Bias | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | Comparison | Na | POR | 95%CI | Z | P-value | Ph | Model | Egger's test | |
| Bsm1 | a vs A | 8 | 0.62 | 0.44-0.87 | 2.79 | 83.3 | 0.000 | Random | ||
| aa vs AA | 0.76 | 0.60-0.96 | 2.34 | 38.4 | 0.136 | Fixed | ||||
| Aa vs AA | 0.59 | 0.39-0.88 | 2.57 | 77.9 | 0.000 | Random | 0.126 | |||
| aa vs AA+Aa | 0.80 | 0.64-0.99 | 2.07 | 27.2 | 0.221 | Fixed | 0.239 | |||
| Aa+aa vs AA | 0.57 | 0.37-0.86 | 2.68 | 81.4 | 0.000 | Random | ||||
| Apal | a vs A | 7 | 0.93 | 0.81-1.07 | 1.00 | 0.318 | 52.8 | 0.048 | Random | 0.411 |
| aa vs AA | 0.85 | 0.62-1.16 | 1.03 | 0.302 | 53.4 | 0.045 | Random | 0.392 | ||
| Aa vs AA | 0.92 | 0.73-1.16 | 1.00 | 0.319 | 59.6 | 0.021 | Random | 0.690 | ||
| aa vs AA+Aa | 0.88 | 0.64-1.21 | 0.77 | 0.439 | 61.8 | 0.015 | Random | 0.337 | ||
| Aa+aa vs AA | 0.90 | 0.74-1.11 | 0.98 | 0.327 | 53.5 | 0.044 | Random | 0.508 | ||
| Taq1 | a vs A | 6 | 0.88 | 0.79-0.98 | 2.38 | 42.1 | 0.125 | Fixed | ||
| aa vs AA | 0.81 | 0.63-1.03 | 1.73 | 0.084 | 0.00 | 0.504 | Fixed | 0.450 | ||
| Aa vs AA | 0.86 | 0.74-1.00 | 1.93 | 0.054 | 45.3 | 0.104 | Fixed | |||
| aa vs AA+Aa | 0.84 | 0.73-0.98 | 2.29 | 45.7 | 0.101 | Fixed | 0.560 | |||
| Aa+aa vs AA | 0.85 | 0.67-1.07 | 1.42 | 0.156 | 0.00 | 0.740 | Fixed | |||
| Cdx-2 | a vs A | 2 | 0.88 | 0.72-1.08 | 1.22 | 0.224 | 51.3 | 0.152 | Random | - |
| aa vs AA | 0.59 | 0.17-2.00 | 0.85 | 0.397 | 68.1 | 0.077 | Random | - | ||
| Aa vs AA | 0.80 | 0.66-0.98 | 2.14 | 0.0 | 0.649 | Fixed | - | |||
| aa vs AA+Aa | 0.68 | 0.16-2.85 | 0.53 | 0.597 | 77.9 | 0.033 | Random | - | ||
| Aa+aa vs AA | 0.79 | 0.65-0.96 | 2.36 | 0.0 | 0.842 | Fixed | - | |||
Meta-analysis between VDR gene polymorphisms and LC based on stratification analysis
| Ethnicity | N | a vs A | aa vs AA | Aa vs AA | aa vs AA+Aa | Aa+aa vs AA | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| POR | 95%CI | POR | 95%CI | POR | 95%CI | POR | 95%CI | POR | 95%CI | |||||||
| Bsm1 | 8 | |||||||||||||||
| Asian | 4 | |||||||||||||||
| Caucasian | 4 | 0.95 | 0.84-1.06 | 0.319 | 0.86 | 0.68-1.10 | 0.240 | 0.97 | 0.83-1.15 | 0.749 | 0.86 | 0.68-1.10 | 0.240 | 0.95 | 0.81-1.11 | 0.513 |
| Apa1 | 7 | |||||||||||||||
| Asian | 4 | 0.95 | 0.83-1.09 | 0.452 | 0.84 | 0.58-1.21 | 0.347 | 0.88 | 0.56-1.39 | 0.579 | 0.80 | 0.49-1.29 | 0.357 | 0.95 | 0.79-1.15 | 0.628 |
| Caucasian | 3 | 0.95 | 0.85-1.06 | 0.325 | 0.89 | 0.48-1.66 | 0.721 | 0.86 | 0.72-1.03 | 0.108 | 0.95 | 0.54-1.69 | 0.867 | 0.87 | 0.74-1.04 | 0.118 |
| Taq1 | 6 | |||||||||||||||
| Asian | 3 | 0.69 | 0.25-1.86 | 0.459 | ||||||||||||
| Caucasian | 3 | 0.91 | 0.81-1.02 | 0.115 | 0.82 | 0.64-1.05 | 0.116 | 0.92 | 0.78- 1.09 | 0.333 | 0.86 | 0.68-1.09 | 0.200 | 0.90 | 0.77-1.05 | 0.186 |
| Cdx-2 | 2 | |||||||||||||||
| Asian | 1 | 0.97 | 0.81-1.17 | 0.776 | 0.98 | 0.54-1.76 | 0.934 | 0.74 | 0.50-0.66 | 0.142 | 1.26 | 0.78-2.04 | 0.352 | 0.76 | 0.51-1.13 | 0.177 |
| Caucasian | 1 | 0.83 | 0.66- 1.04 | 0.104 | 0.29 | 0.08-1.03 | 0.056 | 0.80 | 0.64-1.00 | 0.052 | ||||||
* indicates P <0.05
Sensitive analyses for candidate genes
| Author, Year | Bsm1 | Apa1 | Taq1 | Cdx-2 |
|---|---|---|---|---|
| OR(95%CI) | OR(95%CI) | OR(95%CI) | OR(95%CI) | |
| Dogan, 2009 | 0.74(0.53-1.04) | 1.28(0.92-1.79) | 0.64(0.46-0.90) | - |
| Cai, 2012 | 0.57(0.26-1.29) | 0.47(0.26-0.87) | - | - |
| Yang, 2013 | 0.53(0.24-1.17) | - | 0.62(0.27-1.46) | - |
| Kaabachi, 2014 | 0.99(0.77-1.26) | 0.74(0.57-0.95) | 0.96(0.75-1.23) | - |
| Wu ,2016 | 0.30(0.19-0.45) | 1.03(0.85-1.24) | 0.67(0.38-1.18) | 0.97(0.81-1.17) |
| Bi, 2016 | 0.15(0.05-0.45) | - | - | - |
| Yang, 2017 | - | 0.94(0.73-1.21) | 0.63(0.40-0.99) | - |
| Gromowsk, 2017 | 0.98(0.86-1.13) | 0.96(0.84-1.10) | 0.95(0.83-1.10) | 0.79(0.64-0.98) |
| Hülya Kanbur, 2018 | 0.75(0.41-1.39) | 0.93(0.64-1.35) | - | - |
| Pooled data | 0.62(0.44-0.87) | 0.93(0.81-1.07) | 0.88(0.79-0.98) | 0.88(0.72-1.08) |