Literature DB >> 31325371

The diverse structural landscape of quadruplexes.

Helen L Lightfoot1, Timo Hagen1, Natalie J Tatum2, Jonathan Hall1.   

Abstract

G-quadruplexes are secondary structures formed in G-rich sequences in DNA and RNA. Considerable research over the past three decades has led to in-depth insight into these unusual structures in DNA. Since the more recent exploration into RNA G-quadruplexes, such structures have demonstrated their in cellulo existence, function and roles in pathology. In comparison to Watson-Crick-based secondary structures, most G-quadruplexes display highly redundant structural characteristics. However, numerous reports of G-quadruplex motifs/structures with unique features (e.g. bulges, long loops, vacancy) have recently surfaced, expanding the repertoire of G-quadruplex scaffolds. This review addresses G-quadruplex formation and structure, including recent reports of non-canonical G-quadruplex structures. Improved methods of detection will likely further expand this collection of novel structures and ultimately change the face of quadruplex-RNA targeting as a therapeutic strategy.
© 2019 Federation of European Biochemical Societies.

Keywords:  canonical; non-canonical; nucleic acids; quadruplex; structure

Year:  2019        PMID: 31325371     DOI: 10.1002/1873-3468.13547

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  32 in total

1.  The MDM2 inducible promoter folds into four-tetrad antiparallel G-quadruplexes targetable to fight malignant liposarcoma.

Authors:  Sara Lago; Matteo Nadai; Emanuela Ruggiero; Martina Tassinari; Maja Marušič; Beatrice Tosoni; Ilaria Frasson; Filippo M Cernilogar; Valentina Pirota; Filippo Doria; Janez Plavec; Gunnar Schotta; Sara N Richter
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

2.  Harnessing intrinsic fluorescence for typing of secondary structures of DNA.

Authors:  Michela Zuffo; Aurélie Gandolfini; Brahim Heddi; Anton Granzhan
Journal:  Nucleic Acids Res       Date:  2020-06-19       Impact factor: 16.971

3.  Detection of genomic G-quadruplexes in living cells using a small artificial protein.

Authors:  Ke-Wei Zheng; Jia-Yu Zhang; Yi-de He; Jia-Yuan Gong; Cui-Jiao Wen; Juan-Nan Chen; Yu-Hua Hao; Yong Zhao; Zheng Tan
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

4.  Berberine Molecular Recognition of the Parallel MYC G-Quadruplex in Solution.

Authors:  Jonathan Dickerhoff; Nicole Brundridge; Scott A McLuckey; Danzhou Yang
Journal:  J Med Chem       Date:  2021-10-22       Impact factor: 7.446

5.  Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome.

Authors:  Sara Lago; Matteo Nadai; Filippo M Cernilogar; Maryam Kazerani; Helena Domíniguez Moreno; Gunnar Schotta; Sara N Richter
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

6.  G-quadruplex structural variations in human genome associated with single-nucleotide variations and their impact on gene activity.

Authors:  Jia-Yuan Gong; Cui-Jiao Wen; Ming-Liang Tang; Rui-Fang Duan; Juan-Nan Chen; Jia-Yu Zhang; Ke-Wei Zheng; Yi-de He; Yu-Hua Hao; Qun Yu; Su-Ping Ren; Zheng Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

7.  Structural recognition of the MYC promoter G-quadruplex by a quinoline derivative: insights into molecular targeting of parallel G-quadruplexes.

Authors:  Jonathan Dickerhoff; Jixun Dai; Danzhou Yang
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971

8.  Double-stranded flanking ends affect the folding kinetics and conformational equilibrium of G-quadruplexes forming sequences within the promoter of KIT oncogene.

Authors:  Guglielmo Vesco; Marco Lamperti; Domenico Salerno; Claudia Adriana Marrano; Valeria Cassina; Riccardo Rigo; Enrico Buglione; Maria Bondani; Giulia Nicoletto; Francesco Mantegazza; Claudia Sissi; Luca Nardo
Journal:  Nucleic Acids Res       Date:  2021-09-27       Impact factor: 16.971

Review 9.  How bioinformatics resources work with G4 RNAs.

Authors:  Joanna Miskiewicz; Joanna Sarzynska; Marta Szachniuk
Journal:  Brief Bioinform       Date:  2021-05-20       Impact factor: 11.622

10.  Constrained G4 structures unveil topology specificity of known and new G4 binding proteins.

Authors:  A Pipier; A Devaux; T Lavergne; A Adrait; Y Couté; S Britton; P Calsou; J F Riou; E Defrancq; D Gomez
Journal:  Sci Rep       Date:  2021-06-29       Impact factor: 4.379

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