| Literature DB >> 31321241 |
Yen-Bin Hsu1,2, Chi-Ying F Huang2,3, Kuan-Ting Lin4, Yu-Lun Kuo5, Ming-Chin Lan6,7, Ming-Ying Lan1,8.
Abstract
INTRODUCTION: The role of podoplanin (PDPN) in nasopharyngeal carcinoma (NPC) is still unknown. The aims of this study were to investigate the expression and role of PDPN in NPC cells.Entities:
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Year: 2019 PMID: 31321241 PMCID: PMC6610758 DOI: 10.1155/2019/7457013
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Expression of PDPN in TW01 NPC cells. PDPN expression was found in most TW01 NPC cells (upper row). The expression of PDPN decreased after cells were treated with PDPN siRNA (lower row). PDPN in green; Hoechst nuclear stain in blue.
Figure 2Function of PDPN in TW01 NPC cell proliferation. The WST-1 assay revealed that TW01 NPC cell proliferation was suppressed after cells were treated with PDPN siRNA. PDPN siRNA reduced cell viability in a concentration-dependent manner. Data are means ± SEs from three independent experiments. ∗p < 0. 05 compared with the vehicle control group by ANOVA.
Figure 3Function of PDPN in TW01 NPC cell migration. More cells migrated to the denuded area of the wounds in the control group (left) than in the cells transfected with 200 nM PDPN siRNA (middle) and 200 nM PDPN siRNA (right) 24 hours after the creation of the wound.
Figure 4Function of PDPN in TW01 NPC cell invasion. Matrigel invasion assays of TW01 NPC cells in the control group and the PDPN siRNA group. Migrating cell numbers were counted on the opposite surfaces of filter membranes 48 hours after seeding. ∗p < 0.001 compared with the vehicle control group by ANOVA.
Top 10 upregulated molecules analyzed by IPA.
| Rank | Gene | Expression value |
|---|---|---|
| 1 | IFI27 | 7.041 |
| 2 | IFI44L | 5.551 |
| 3 | IFI6 | 5.029 |
| 4 | OAS1 | 4.580 |
| 5 | TRIM22 | 3.315 |
| 6 | IFITM1 | 3.130 |
| 7 | OAS2 | 3.069 |
| 8 | STAT1 | 2.809 |
| 9 | CMPK2 | 2.793 |
| 10 | OAS3 | 2.771 |
Top 10 downregulated molecules analyzed by IPA.
| Rank | Gene | Expression value |
|---|---|---|
| 1 | PDPN | -2.199 |
| 2 | NALCN | -1.249 |
| 3 | TMTC4 | -1.220 |
| 4 | ZFP1 | -1.138 |
| 5 | LINC00973 | -1.114 |
| 6 | JPH3 | -1.101 |
| 7 | BOP1 | -1.060 |
| 8 | MMP12 | -1.043 |
| 9 | RGL3 | -1.042 |
| 10 | SMIM2-AS1 | -1.024 |
Top 5 upstream regulators analyzed by IPA.
| Rank | Gene | p-value | Predicted Activation |
|---|---|---|---|
| 1 | IFNL1 | 1.15E-61 | Activated |
| 2 | IFNA2 | 1.24E-58 | Activated |
| 3 | MAPK1 | 1.59E-42 | Inhibited |
| 4 | Interferon alpha | 1.78E-41 | Activated |
| 5 | IRF7 | 2.50E-41 | Activated |
Top 5 canonical pathways identified by IPA.
| Rank | Canonical Pathways | p-value | Overlap |
|---|---|---|---|
| 1 | Interferon Signaling | 5.53E-16 | 27.8% (10/36) |
| 2 | Activation of IRF by Cytosolic Pattern Recognition Receptors | 3.44E-07 | 10.0% (6/60) |
| 3 | Role of Pattern Recognition Receptors in Recognition of Bacteria and Viruses | 3.55E-07 | 5.5% (8/145) |
| 4 | Role of PKR in Interferon Induction and Antiviral Response | 8.64E-04 | 7.5% (3/40) |
| 5 | Role of RIG1-like Receptors in Antiviral Innate Immunity | 9.29E-04 | 7.3% (3/41) |
Figure 5The most highly rated network analyzed with IPA. The genes shaded red are upregulated, and those shaded green are downregulated. All shaded genes are statistically significant. A dotted line means an indirect interaction between the two gene products, and a solid line represents a direct interaction.