Literature DB >> 31319671

Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation.

Pablo Carbonell1, Tijana Radivojevic2,3, Héctor García Martín2,4,3,5.   

Abstract

Our inability to predict the behavior of biological systems severely hampers progress in bioengineering and biomedical applications. We cannot predict the effect of genotype changes on phenotype, nor extrapolate the large-scale behavior from small-scale experiments. Machine learning techniques recently reached a new level of maturity, and are capable of providing the needed predictive power without a detailed mechanistic understanding. However, they require large amounts of data to be trained. The amount and quality of data required can only be produced through a combination of synthetic biology and automation, so as to generate a large diversity of biological systems with high reproducibility. A sustained investment in the intersection of synthetic biology, machine learning, and automation will drive forward predictive biology, and produce improved machine learning algorithms.

Entities:  

Mesh:

Year:  2019        PMID: 31319671     DOI: 10.1021/acssynbio.8b00540

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  11 in total

1.  Setting Up an Automated Biomanufacturing Laboratory.

Authors:  Marilene Pavan
Journal:  Methods Mol Biol       Date:  2021

2.  Prediction of Cellular Burden with Host-Circuit Models.

Authors:  Evangelos-Marios Nikolados; Andrea Y Weiße; Diego A Oyarzún
Journal:  Methods Mol Biol       Date:  2021

3.  Assessing the Risks Posed by the Convergence of Artificial Intelligence and Biotechnology.

Authors:  John T O'Brien; Cassidy Nelson
Journal:  Health Secur       Date:  2020 May/Jun

4.  A linear programming-based strategy to save pipette tips in automated DNA assembly.

Authors:  Kirill Sechkar; Zoltan A Tuza; Guy-Bart Stan
Journal:  Synth Biol (Oxf)       Date:  2022-04-11

5.  Challenges to Ensure a Better Translation of Metabolic Engineering for Industrial Applications.

Authors:  Fayza Daboussi; Nic D Lindley
Journal:  Methods Mol Biol       Date:  2023

6.  A versatile active learning workflow for optimization of genetic and metabolic networks.

Authors:  Amir Pandi; Christoph Diehl; Ali Yazdizadeh Kharrazi; Scott A Scholz; Elizaveta Bobkova; Léon Faure; Maren Nattermann; David Adam; Nils Chapin; Yeganeh Foroughijabbari; Charles Moritz; Nicole Paczia; Niña Socorro Cortina; Jean-Loup Faulon; Tobias J Erb
Journal:  Nat Commun       Date:  2022-07-05       Impact factor: 17.694

Review 7.  Microbial production of advanced biofuels.

Authors:  Jay Keasling; Hector Garcia Martin; Taek Soon Lee; Aindrila Mukhopadhyay; Steven W Singer; Eric Sundstrom
Journal:  Nat Rev Microbiol       Date:  2021-06-25       Impact factor: 60.633

Review 8.  Biological Materials: The Next Frontier for Cell-Free Synthetic Biology.

Authors:  Richard J R Kelwick; Alexander J Webb; Paul S Freemont
Journal:  Front Bioeng Biotechnol       Date:  2020-05-12

9.  In silico design and automated learning to boost next-generation smart biomanufacturing.

Authors:  Pablo Carbonell; Rosalind Le Feuvre; Eriko Takano; Nigel S Scrutton
Journal:  Synth Biol (Oxf)       Date:  2020-10-17

10.  Multiomics Data Collection, Visualization, and Utilization for Guiding Metabolic Engineering.

Authors:  Somtirtha Roy; Tijana Radivojevic; Mark Forrer; Jose Manuel Marti; Vamshi Jonnalagadda; Tyler Backman; William Morrell; Hector Plahar; Joonhoon Kim; Nathan Hillson; Hector Garcia Martin
Journal:  Front Bioeng Biotechnol       Date:  2021-02-09
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.