Literature DB >> 31317536

Hybrid physics-based and data-driven modeling for bioprocess online simulation and optimization.

Dongda Zhang1,2, Ehecatl Antonio Del Rio-Chanona2, Panagiotis Petsagkourakis1,3, Jonathan Wagner4.   

Abstract

Model-based online optimization has not been widely applied to bioprocesses due to the challenges of modeling complex biological behaviors, low-quality industrial measurements, and lack of visualization techniques for ongoing processes. This study proposes an innovative hybrid modeling framework which takes advantages of both physics-based and data-driven modeling for bioprocess online monitoring, prediction, and optimization. The framework initially generates high-quality data by correcting raw process measurements via a physics-based noise filter (a generally available simple kinetic model with high fitting but low predictive performance); then constructs a predictive data-driven model to identify optimal control actions and predict discrete future bioprocess behaviors. Continuous future process trajectories are subsequently visualized by re-fitting the simple kinetic model (soft sensor) using the data-driven model predicted discrete future data points, enabling the accurate monitoring of ongoing processes at any operating time. This framework was tested to maximize fed-batch microalgal lutein production by combining with different online optimization schemes and compared against the conventional open-loop optimization technique. The optimal results using the proposed framework were found to be comparable to the theoretically best production, demonstrating its high predictive and flexible capabilities as well as its potential for industrial application.
© 2019 Wiley Periodicals, Inc.

Keywords:  bioprocess optimization; data recalibration; fed-batch operation; kinetic modeling; machine learning

Year:  2019        PMID: 31317536     DOI: 10.1002/bit.27120

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  8 in total

1.  Human-Device Interaction in the Life Science Laboratory.

Authors:  Robert Söldner; Sophia Rheinländer; Tim Meyer; Michael Olszowy; Jonas Austerjost
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.768

2.  Analytical solution for a hybrid Logistic-Monod cell growth model in batch and continuous stirred tank reactor culture.

Authors:  Peng Xu
Journal:  Biotechnol Bioeng       Date:  2019-12-02       Impact factor: 4.530

3.  View on a mechanistic model of Chlorella vulgaris in incubated shake flasks.

Authors:  Fabian Kuhfuß; Veronika Gassenmeier; Sahar Deppe; George Ifrim; Tanja Hernández Rodríguez; Björn Frahm
Journal:  Bioprocess Biosyst Eng       Date:  2021-10-22       Impact factor: 3.210

4.  A Novel Digital Twin Architecture with Similarity-Based Hybrid Modeling for Supporting Dependable Disaster Management Systems.

Authors:  Seong-Jin Yun; Jin-Woo Kwon; Won-Tae Kim
Journal:  Sensors (Basel)       Date:  2022-06-24       Impact factor: 3.847

Review 5.  Optimization and Scale-Up of Fermentation Processes Driven by Models.

Authors:  Yuan-Hang Du; Min-Yu Wang; Lin-Hui Yang; Ling-Ling Tong; Dong-Sheng Guo; Xiao-Jun Ji
Journal:  Bioengineering (Basel)       Date:  2022-09-14

6.  Generic and specific recurrent neural network models: Applications for large and small scale biopharmaceutical upstream processes.

Authors:  Jens Smiatek; Christoph Clemens; Liliana Montano Herrera; Sabine Arnold; Bettina Knapp; Beate Presser; Alexander Jung; Thomas Wucherpfennig; Erich Bluhmki
Journal:  Biotechnol Rep (Amst)       Date:  2021-05-28

7.  Harnessing the potential of artificial neural networks for predicting protein glycosylation.

Authors:  Pavlos Kotidis; Cleo Kontoravdi
Journal:  Metab Eng Commun       Date:  2020-05-15

8.  Three-level hybrid modeling for systematic optimization of biocatalytic synthesis: α-glucosyl glycerol production by enzymatic trans-glycosylation from sucrose.

Authors:  Alexander Sigg; Mario Klimacek; Bernd Nidetzky
Journal:  Biotechnol Bioeng       Date:  2021-07-28       Impact factor: 4.530

  8 in total

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