Literature DB >> 31313131

The study of inter-specific relationships of Bromus genus based on SCoT and ISSR molecular markers.

Hooshmand Safari1,2, Alireza Zebarjadi3, Danial Kahrizi1, Ali Ashraf Jafari4.   

Abstract

The genus of Bromus is one of the most important collection of rangeland plants, which are distributed in a wide range of natural areas of Iran. Interspecific relationships were evaluated in 90 accessions of 18 Bromus species based on 15 ISSR and 15 SCoT primers. SCoT markers separated the accessions better than ISSR marker. In addition, there was a high interspecific diversity between surveying germplasm. The sections of Bromus genus completely separated based on DNA molecular markers. SCoT markers could separate the accessions in each species. The primers of SC5 and SC35 from SCoT marker and UBC861, UBC857 and UBC844 primers from ISSR marker were identified as the best primers in revealing of genetic diversity between accessions. The sections of Ceratochloa, Genea, Pnigma and Bromus were monophyletic and were placed in one cluster. The section Bromus had a direct relationship with section Genea. In other words, section Ceratochloa has a direct relationship with Pnigma. B. tectorum and B. sericeus. B. sterilis had the most distance with other species in section Genea. B. squarrosus and B. japonicus had the most similarity and B. briziformis with B. danthoniae and B. scoparius with B. rechingeri had a moderate relationship in section Bromus. B. tomentosus and B. persicus had the highest similarity and B. riparius with B. biebersteinii and B. tomentellus with B. inermis had a moderate similarity in section Pnigma.

Entities:  

Keywords:  Bromus; ISSR marker; Interspecific relationships; SCoT marker

Mesh:

Substances:

Year:  2019        PMID: 31313131     DOI: 10.1007/s11033-019-04978-2

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  8 in total

1.  Chloroplast DNA variation in diploid and polyploid species of Bromus (Poaceae) subgenera Festucaria and Ceratochloa.

Authors:  M Pillay; K W Hilu
Journal:  Theor Appl Genet       Date:  1990-09       Impact factor: 5.699

2.  Seedling Development and Field Performance of Prairiegrass, Grazing Bromegrass, and Orchardgrass.

Authors:  Matt A. Sanderson; R. H. Skinner; Gerald F. Elwinger
Journal:  Crop Sci       Date:  2002-01       Impact factor: 2.319

3.  Molecular phylogeny and reticulate origins of the polyploid Bromus species from section Genea (Poaceae).

Authors:  Philippe M Fortune; Nathalie Pourtau; Nicolas Viron; Malika L Ainouche
Journal:  Am J Bot       Date:  2008-04       Impact factor: 3.844

4.  Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification.

Authors:  E Zietkiewicz; A Rafalski; D Labuda
Journal:  Genomics       Date:  1994-03-15       Impact factor: 5.736

5.  On the origins of the tetraploid Bromus species (section Bromus, Poaceae): insights from internal transcribed spacer sequences of nuclear ribosomal DNA.

Authors:  M L Ainouche; R J Bayer
Journal:  Genome       Date:  1997-10       Impact factor: 2.166

6.  Start codon targeted polymorphism for evaluation of functional genetic variation and relationships in cultivated peanut (Arachis hypogaea L.) genotypes.

Authors:  Faqian Xiong; Ruichun Zhong; Zhuqiang Han; Jing Jiang; Liangqiong He; Weijian Zhuang; Ronghua Tang
Journal:  Mol Biol Rep       Date:  2010-11-23       Impact factor: 2.316

7.  The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.

Authors:  Jose Eduardo de la Torre-Bárcena; Sergios-Orestis Kolokotronis; Ernest K Lee; Dennis Wm Stevenson; Eric D Brenner; Manpreet S Katari; Gloria M Coruzzi; Rob DeSalle
Journal:  PLoS One       Date:  2009-06-02       Impact factor: 3.240

8.  Genetic diversity and population structure of Miscanthus lutarioriparius, an endemic plant of China.

Authors:  Sai Yang; Shuai Xue; Weiwei Kang; Zhuxi Qian; Zili Yi
Journal:  PLoS One       Date:  2019-02-01       Impact factor: 3.240

  8 in total
  2 in total

1.  DNA Fingerprinting and Genetic Relationships Similarities Among the Accessions/Species of Ocimum Using SCoT and ISSR Markers System.

Authors:  Pankhuri Gupta; Anand Mishra; R K Lal; Sunita Singh Dhawan
Journal:  Mol Biotechnol       Date:  2021-03-22       Impact factor: 2.695

2.  A comparative assessment of morphological and molecular characterization among three Ziziphus species.

Authors:  Abdolkarim Zarei; Asma Rezaei; Mohammad Esmailpour; Aziz Ebrahimi
Journal:  Physiol Mol Biol Plants       Date:  2021-05-04
  2 in total

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