| Literature DB >> 31306408 |
Michael Simonov1, Ugochukwu Ugwuowo1, Erica Moreira2, Yu Yamamoto1, Aditya Biswas1, Melissa Martin1, Jeffrey Testani3, F Perry Wilson1.
Abstract
BACKGROUND: Acute kidney injury (AKI) is an adverse event that carries significant morbidity. Given that interventions after AKI occurrence have poor performance, there is substantial interest in prediction of AKI prior to its diagnosis. However, integration of real-time prognostic modeling into the electronic health record (EHR) has been challenging, as complex models increase the risk of error and complicate deployment. Our goal in this study was to create an implementable predictive model to accurately predict AKI in hospitalized patients and could be easily integrated within an existing EHR system. METHODS ANDEntities:
Mesh:
Year: 2019 PMID: 31306408 PMCID: PMC6629054 DOI: 10.1371/journal.pmed.1002861
Source DB: PubMed Journal: PLoS Med ISSN: 1549-1277 Impact factor: 11.069
Fig 1Flow diagram of the patient cohort with distribution of data among training and validation data sets.
Baseline patient characteristics.
Baseline patient characteristics in the training and validation sets. Data is in count (%) or median (IQR). There is significant difference across the data sets for all variables listed here at P < 0.001. Missing data is provided as a percentage of total time points included in the model (N = 22,743,165).
| YNHH Training Set ( | YNHH Validation Set ( | SRH ( | BH ( | Missing Data (%) | |
|---|---|---|---|---|---|
| Age, y | 61 (47–74) | 60 (47–74) | 68 (55–81) | 65 (50–79) | 0 |
| Sex, male | 29,649 (48.8%) | 15,013 (49.1%) | 19,478 (44.7%) | 16,212 (46.3%) | 0 |
| Race, black | 10,173 (16.8%) | 5,066 (16.6%) | 7,694 (17.7%) | 6,973 (19.9%) | 0 |
| Surgical admission | 17,265 (28.4%) | 8,809 (28.8%) | 11,197 (25.7%) | 8,214 (23.5%) | 0 |
| Bicarbonate, mmol/L | 22.7 (20.6–24.9) | 22.6 (20.5–24.8) | 24 (22–26) | 25 (23–28) | 9.1 |
| BUN, mg/dL | 16 (11–24) | 16 (11–24) | 17 (12–25) | 17 (12–25) | 9.2 |
| Chloride, mmol/L | 102 (99–105) | 102 (99–105) | 102 (99–105) | 103 (100–106) | 9.8 |
| Creatinine, mg/dL | 0.9 (0.7–1.2) | 0.9 (0.7–1.2) | 0.9 (0.7–1.2) | 0.9 (0.7–1.2) | 8.9 |
| Hemoglobin, g/dL | 12.6 (10.8–14.1) | 12.5 (10.8–14.1) | 12.4 (10.9–13.8) | 12.2 (10.6–13.6) | 8.6 |
| Platelets (x 109/L) | 232 (176–298) | 232 (175–297) | 227 (179–287) | 224 (174–282) | 8.7 |
| Potassium, mmol/L | 4 (3.7–4.4) | 4 (3.7–4.4) | 4.1 (3.7–4.4) | 4.2 (3.9–4.6) | 9.2 |
| Sodium, mmol/L | 138 (136–141) | 138 (136–141) | 139 (136–141) | 139 (136–141) | 9.1 |
| White blood cells (cells/mm3) | 9.1 (6.7–12.3) | 9.1 (6.7–12.4) | 9 (6.8–12.2) | 9.1 (6.8–12.3) | 8.7 |
| CHF | 9,038 (14.9%) | 4,474 (14.6%) | 7,806 (17.9%) | 5,216 (14.9%) | 0 |
| Diabetes | 13,124 (21.6%) | 6,650 (21.7%) | 10,599 (24.3%) | 7,175 (20.5%) | 0 |
| Hypertension | 5,369 (8.8%) | 2,675 (8.7%) | 4,989 (11.5%) | 3,001 (8.6%) | 0 |
| Liver disease | 4,556 (7.5%) | 2,288 (7.5%) | 2,348 (5.4%) | 1,580 (4.5%) | 0 |
| Elixhauser score | 3 (1–5) | 3 (1–5) | 3 (1–5) | 2 (0–4) | 0 |
| BiPAP use | 1,991 (3.3%) | 1,054 (3.4%) | 1,999 (4.6%) | 1,009 (2.9%) | 0 |
| Contrast study | 14,267 (23.5%) | 6,947 (22.7%) | 6,177 (14.2%) | 7,203 (20.6%) | 0 |
| Ventilation requirement | 5,064 (8.3%) | 2,473 (8.1%) | 1,305 (3%) | 1,642 (4.7%) | 0 |
| ICU | 14,059 (23.2%) | 6,911 (22.6%) | 5,198 (11.9%) | 4,429 (12.6%) | 0 |
| Cardiac catheterization | 2,954 (4.9%) | 1,548 (5.1%) | 1,130 (2.6%) | 1,106 (3.2%) | 0 |
| RBC transfusion | 8,390 (13.8%) | 4,128 (13.5%) | 4,355 (10%) | 3,099 (8.8%) | 0 |
| ACE or ARB | 12,427 (20.5%) | 6,298 (20.6%) | 11,699 (26.9%) | 8,452 (24.1%) | 0 |
| Antibiotic | 37,041 (61%) | 18,558 (60.6%) | 29,321 (67.4%) | 17,227 (49.2%) | 0 |
| Chemotherapy | 1,481 (2.4%) | 708 (2.3%) | 160 (0.4%) | 312 (0.9%) | 0 |
| Diuretic | 16,707 (27.5%) | 8,467 (27.7%) | 13,949 (32%) | 8,373 (23.9%) | 0 |
| Narcotic | 38,046 (62.7%) | 19,152 (62.6%) | 26,506 (60.9%) | 16,487 (47.1%) | 0 |
| NSAID | 5,928 (9.8%) | 3,020 (9.9%) | 6,678 (15.3%) | 3,407 (9.7%) | 0 |
| Vasopressor | 11,091 (18.3%) | 5,497 (18%) | 7,955 (18.3%) | 3,798 (10.8%) | 0 |
| Proton pump inhibitor | 23,967 (39.5%) | 11,852 (38.7%) | 20,421 (46.9%) | 11,864 (33.9%) | 0 |
| Statin | 11,637 (19.2%) | 5,854 (19.1%) | 10,250 (23.5%) | 5,967 (17.0%) | 0 |
Abbreviations: ACE, angiotensin converting enzyme inhibitor; ARB, angiotensin II receptor blockers; AKI, acute kidney injury; BH, Bridgeport Hospital; BiPAP, Bilevel Positive Airway Pressure; BUN, blood urea nitrogen; CHF, congestive heart failure; ICU, intensive care unit; IQR, interquartile range; NSAID, nonsteroidal anti-inflammatory drug; SRH, Saint Raphael's Hospital; RBC, red blood cell; YNHH, Yale New Haven Hospital.
Patient outcomes within training and testing cohort.
Outcomes within the training and test cohort. Values are N (%). P values represent differences across the three test cohorts.
| YNHH Training Set | YNHH Validation Set | SRH | BH | ||
|---|---|---|---|---|---|
| N | 60,701 | 30,599 | 43,534 | 35,025 | <0.001 |
| AKI (any stage) | 11,593 (19.1) | 5,772 (18.9) | 7,416 (17.0) | 3,977 (11.4) | <0.001 |
| AKI Stage 1 | 9,366 (15.4) | 4,657 (15.2) | 6,194 (14.2) | 3,157 (9.0) | <0.001 |
| AKI Stage 2 | 1,578 (2.6) | 758 (2.5) | 916 (2.1) | 542 (1.5) | <0.001 |
| AKI Stage 3 | 657 (1.1) | 364 (1.2) | 308 (0.7) | 295 (0.8) | <0.001 |
| Sustained AKI | 6,196 (10.2) | 3,056 (10.0) | 3,463 (8.0) | 2,070 (5.9) | <0.001 |
| Renal replacement therapy | 341 (0.6) | 204 (0.7) | 117 (0.3) | 135 (0.4) | <0.001 |
| Death | 1,698 (2.8) | 868 (2.8) | 696 (1.6) | 760 (2.2) | <0.001 |
Abbreviations: AKI, acute kidney injury; BH, Bridgeport Hospital; SRH, Saint Raphael's Hospital; YNHH, Yale New Haven Hospital.
Characteristics of patients at times not prior to AKI versus prior to AKI.
Characteristics and univariable comparisons between times within 24 hours of AKI onset versus times not prior to AKI onset in the training set. Data is count (%) or median (IQR).
| No AKI in 24 ( | Yes AKI in 24 ( | ||
|---|---|---|---|
| Age, y | 61 (48–73) | 66 (53–77) | <0.001 |
| Sex, male | 50.2% | 54.4% | <0.001 |
| Race, black | 15.1% | 16.2% | 0.006 |
| Surgical admission | 21.4% | 24.6% | <0.001 |
| Bicarbonate, mmol/L | 22.8 (20.8–25) | 22 (19.5–24.4) | <0.001 |
| BUN, mg/dL | 15 (10–22) | 19 (13–29) | <0.001 |
| Chloride, mmol/L | 103 (100–105) | 103 (99–106) | 0.14 |
| Creatinine, mg/dL | 0.8 (0.6–1) | 1 (0.7–1.4) | <0.001 |
| Change in creatinine over last 48 hours, mg/dL | 0 (0–0) | 0 (0–0.1) | <0.001 |
| Hemoglobin, g/dL | 11.2 (9.5–12.9) | 11 (9.4–12.7) | <0.001 |
| Platelets (x 109/L) | 221 (159–295) | 203 (141–277) | <0.001 |
| Potassium, mmol/L | 4 (3.7–4.3) | 4.1 (3.7–4.4) | <0.001 |
| Sodium, mmol/L | 138 (136–141) | 138 (136–141) | 0.08 |
| White blood cells (cells/mm3) | 8.7 (6.3–11.8) | 9.9 (7–13.6) | <0.001 |
| CHF | 15.9% | 30.7% | <0.001 |
| Diabetes | 21.8% | 28.9% | <0.001 |
| Hypertension | 7.8% | 18.5% | <0.001 |
| Liver disease | 7.9% | 11.9% | <0.001 |
| Elixhauser score | 3 (1–5) | 4 (3–6) | <0.001 |
| BiPAP use | 4.4% | 7.6% | <0.001 |
| Contrast study | 27.6% | 25.4% | <0.001 |
| Ventilation requirement | 13.8% | 28.4% | <0.001 |
| ICU | 20.2% | 40% | <0.001 |
| Cardiac catheterization | 4.1% | 8% | <0.001 |
| RBC transfusion | 18.1% | 25.1% | <0.001 |
| ACE or ARB | 13.9% | 14.7% | 0.02 |
| Antibiotic | 63.5% | 68.8% | <0.001 |
| Chemotherapy | 2.7% | 1.6% | <0.001 |
| Diuretic | 23.6% | 36.1% | <0.001 |
| Narcotic | 64.6% | 68.5% | <0.001 |
| NSAID | 5.8% | 3.9% | <0.001 |
| Vasopressor | 22.2% | 33.9% | <0.001 |
| Proton pump inhibitor | 36.7% | 38.1% | 0.007 |
| Statin | 14.7% | 15.5% | 0.03 |
Abbreviations: ACE, angiotensin converting enzyme inhibitor; ARB, angiotensin II receptor blockers; AKI, acute kidney injury; BiPAP, Bilevel Positive Airway Pressure; BUN, blood urea nitrogen; CHF, congestive heart failure; ICU, intensive care unit; IQR, interquartile range; NSAID, nonsteroidal anti-inflammatory drug; RBC, red blood cell.
Fig 2Performance of model covariates within the fully adjusted model.
Higher absolute value of Wald z-scores indicate a greater degree of statistical significance within the predictive model.
Model performance for prediction of 24-hour AKI and related outcomes.
Performance of multivariable models for prediction of 24-hour AKI, sustained AKI, renal replacement therapy, and inpatient mortality, with columns signifying models utilizing different subsets of input variables. Model performance is displayed as AUC for each model when applied to data from the YNHH validation set and SRH and BH data sets.
| AUC (95% CI) | ||||||
|---|---|---|---|---|---|---|
| Full Model | Demographic | Medications | Change in Creatinine | Procedures | Laboratory Studies | |
| YNHH validation set | 0.74 (0.73–0.74) | 0.65 (0.64–0.66) | 0.59 (0.59–0.60) | 0.61 (0.60–0.61) | 0.63 (0.62–0.63) | 0.69 (0.68–0.70) |
| SRH | 0.69 (0.68–0.69) | 0.62 (0.61–0.63) | 0.60 (0.59–0.61) | 0.59 (0.58–0.60) | 0.59 (0.58–0.59) | 0.64 (0.63–0.65) |
| BH | 0.76 (0.75–0.77) | 0.63 (0.62–0.65) | 0.62 (0.61–0.63) | 0.64 (0.63–0.65) | 0.60 (0.59–0.61) | 0.74 (0.73–0.75) |
| YNHH validation set | 0.77 (0.76–0.78) | 0.68 (0.67–0.69) | 0.62 (0.61–0.63) | 0.60 (0.59–0.61) | 0.66 (0.65–0.67) | 0.70 (0.69–0.72) |
| SRH | 0.72 (0.71–0.73) | 0.65 (0.64–0.66) | 0.62 (0.61–0.63) | 0.57 (0.56–0.58) | 0.62 (0.61–0.63) | 0.65 (0.64–0.66) |
| BH | 0.79 (0.78–0.80) | 0.65 (0.64–0.67) | 0.63 (0.62–0.65) | 0.63 (0.62–0.65) | 0.63 (0.61–0.64) | 0.76 (0.74–0.77) |
| YNHH validation set | 0.79 (0.73–0.85) | 0.79 (0.73–0.85) | 0.60 (0.52–0.67) | 0.51 (0.48–0.54) | 0.67 (0.61–0.74) | 0.73 (0.66–0.79) |
| SRH | 0.85 (0.80–0.89) | 0.78 (0.73–0.83) | 0.61 (0.55–0.67) | 0.51 (0.46–0.57) | 0.62 (0.55–0.69) | 0.83 (0.78–0.88) |
| BH | 0.78 (0.74–0.82) | 0.72 (0.66–0.78) | 0.56 (0.49–0.63) | 0.50 (0.47–0.54) | 0.62 (0.57–0.68) | 0.70 (0.64–0.75) |
| YNHH validation set | 0.69 (0.67–0.72) | 0.66 (0.64–0.69) | 0.59 (0.56–0.62) | 0.53 (0.51–0.54) | 0.67 (0.65–0.70) | 0.60 (0.57–0.63) |
| SRH | 0.75 (0.73–0.77) | 0.74 (0.71–0.76) | 0.67 (0.64–0.69) | 0.53 (0.52–0.55) | 0.72 (0.69–0.75) | 0.63 (0.60–0.66) |
| BH | 0.73 (0.71–0.75) | 0.68 (0.65–0.71) | 0.63 (0.60–0.66) | 0.56 (0.55–0.58) | 0.66 (0.63–0.70) | 0.65 (0.62–0.67) |
Abbreviations: AKI, acute kidney injury; AUC, area under the ROC curve; BH, Bridgeport Hospital; SRH, Saint Raphael's Hospital; YNHH, Yale New Haven Hospital.
Fig 3ROC curves of the various AKI models.
Curves reflect performance in a test set composed of a combination of the internal and external validation cohorts. (A) Prediction of AKI in 24 hours. (B) Prediction of hospital mortality. (C) Prediction of need for renal replacement therapy. (D) Prediction of sustained AKI. AKI, acute kidney injury; ROC, receiver-operator characteristic.