Literature DB >> 31300840

Comparative Analysis of Draft Genome Sequence of Rhodococcus sp. Eu-32 with Other Rhodococcus Species for Its Taxonomic Status and Sulfur Metabolism Potential.

Nasrin Akhtar1, Muhammad A Ghauri2, Kalsoom Akhtar3, Sana Parveen3, Muhammad Farooq4, Aamir Ali5, Peter Schierack6.   

Abstract

Rhodococcus sp. Eu-32 has shown an extended novel dibenzothiophene desulfurization sulfur-specific 4S pathway and could remove significant amounts of organic sulfur from coal. Here, we present the draft genome sequence of Eu-32 with a genome size of approximately 5.61 Mb, containing 5065 protein coding sequences with a G+C content of 65.1%. The Rhodococcus sp. Eu-32 showed ~ 99% identity at the 16S rRNA gene sequence level while < 34% digital DNA-DNA hybridization and < 81% average nucleotide identity values with the genome sequence of most closely related known Rhodococcus species, suggesting that it is taxonomically different from the already reported Rhodococcus species. Among the annotated genes, 90 are involved in the metabolism of sulfur. Comparative genome analysis suggests many commonalities in sulfur metabolism gene sets that may have evolved due to many factors including ecological pressures. Our study and the genome sequence data will be available for further research and will provide insights into potential biotechnological and industrial applications of this bacterium.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31300840     DOI: 10.1007/s00284-019-01737-1

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  14 in total

1.  Kinetic study of esterification by immobilized lipase in n-hexane.

Authors:  W Chulalaksananukul; J S Condoret; P Delorme; R M Willemot
Journal:  FEBS Lett       Date:  1990-12-10       Impact factor: 4.124

Review 2.  Biodesulfurization of refractory organic sulfur compounds in fossil fuels.

Authors:  Mehran Soleimani; Amarjeet Bassi; Argyrios Margaritis
Journal:  Biotechnol Adv       Date:  2007-07-31       Impact factor: 14.227

3.  Exploring the mechanism of biocatalyst inhibition in microbial desulfurization.

Authors:  Andres Abin-Fuentes; Magdy El-Said Mohamed; Daniel I C Wang; Kristala L J Prather
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

4.  Analysis of the dibenzothiophene metabolic pathway in a newly isolated Rhodococcus spp.

Authors:  Nasrin Akhtar; Muhammad A Ghauri; Munir A Anwar; Kalsoom Akhtar
Journal:  FEMS Microbiol Lett       Date:  2009-09-17       Impact factor: 2.742

Review 5.  Mechanism for sulfur acquisition by the alkanesulfonate monooxygenase system.

Authors:  Holly R Ellis
Journal:  Bioorg Chem       Date:  2011-08-10       Impact factor: 5.275

6.  Desulfurization and denitrogenation of heavy gas oil by Rhodococcus erythropolis ATCC 4277.

Authors:  D Maass; D Todescato; D E Moritz; J Vladimir Oliveira; D Oliveira; A A Ulson de Souza; S M A Guelli Souza
Journal:  Bioprocess Biosyst Eng       Date:  2015-03-11       Impact factor: 3.210

7.  Improved conversion of Dibenzothiophene into sulfone by surface display of Dibenzothiophene monooxygenase (DszC) in recombinant Escherichia coli.

Authors:  Sabita Rangra; Mira Kabra; Vageesh Gupta; Preeti Srivastava
Journal:  J Biotechnol       Date:  2018-10-12       Impact factor: 3.307

8.  Improving the Catalytic Power of the DszD Enzyme for the Biodesulfurization of Crude Oil and Derivatives.

Authors:  Pedro Ferreira; Sérgio F Sousa; Pedro A Fernandes; Maria João Ramos
Journal:  Chemistry       Date:  2017-11-22       Impact factor: 5.236

Review 9.  BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.

Authors:  Minoru Kanehisa; Yoko Sato; Kanae Morishima
Journal:  J Mol Biol       Date:  2015-11-14       Impact factor: 5.469

10.  Comparative Genomic Analysis of Sulfurospirillum cavolei MES Reconstructed from the Metagenome of an Electrosynthetic Microbiome.

Authors:  Daniel E Ross; Christopher W Marshall; Harold D May; R Sean Norman
Journal:  PLoS One       Date:  2016-03-16       Impact factor: 3.240

View more
  3 in total

1.  Revealing Genome-Based Biosynthetic Potential of Streptomyces sp. BR123 Isolated from Sunflower Rhizosphere with Broad Spectrum Antimicrobial Activity.

Authors:  Neelma Ashraf; Sana Zafar; Roman Makitrynskyy; Andreas Bechthold; Dieter Spiteller; Lijiang Song; Munir Ahmad Anwar; Andriy Luzhetskyy; Ali Nisar Khan; Kalsoom Akhtar; Shazia Khaliq
Journal:  Antibiotics (Basel)       Date:  2022-08-04

2.  Genomic analysis provides insights into the Gordonia sp. W3S5 taxonomy and sulfur metabolism-related genes.

Authors:  Sana Parveen; Nasrin Akhtar; Javeria Akram
Journal:  3 Biotech       Date:  2021-05-29       Impact factor: 2.893

3.  Genome-Based Insights into the Production of Carotenoids by Antarctic Bacteria, Planococcus sp. ANT_H30 and Rhodococcus sp. ANT_H53B.

Authors:  Michal Styczynski; Agata Rogowska; Katarzyna Gieczewska; Maciej Garstka; Anna Szakiel; Lukasz Dziewit
Journal:  Molecules       Date:  2020-09-23       Impact factor: 4.411

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.