Literature DB >> 31300188

Promoter Recognition: Putting TFIID on the Spot.

Tanja Bhuiyan1, H Th Marc Timmers2.   

Abstract

Basal transcription factor TFIID connects transcription activation to the assembly of the RNA polymerase II preinitiation complex at the core promoter of genes. The mechanistic understanding of TFIID function and dynamics has been limited by the lack of high-resolution structures of the holo-TFIID complex. Recent cryo-electron microscopy studies of yeast and human TFIID complexes provide insight into the molecular organization and structural dynamics of this highly conserved transcription factor. Here, we discuss how these TFIID structures provide new paradigms for: (i) the dynamic recruitment of TFIID; (ii) the binding of TATA-binding protein (TBP) to promoter DNA; (iii) the multivalency of TFIID interactions with (co)activators, nucleosomes, or promoter DNA; and (iv) the opportunities for regulation of TBP turnover and promoter dynamics.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA polymerase; TFIID; basal transcription factors; core promoters; cryo-EM; transcription regulation

Mesh:

Substances:

Year:  2019        PMID: 31300188     DOI: 10.1016/j.tcb.2019.06.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  13 in total

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Authors:  Niko Linzer; Alexis Trumbull; Rukiye Nar; Matthew D Gibbons; David T Yu; John Strouboulis; Jörg Bungert
Journal:  Front Mol Biosci       Date:  2021-05-13

3.  TaDrAp1 and TaDrAp2, Partner Genes of a Transcription Repressor, Coordinate Plant Development and Drought Tolerance in Spelt and Bread Wheat.

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Journal:  Int J Mol Sci       Date:  2020-11-05       Impact factor: 5.923

4.  A unified view of the sequence and functional organization of the human RNA polymerase II promoter.

Authors:  Donal S Luse; Mrutyunjaya Parida; Benjamin M Spector; Kyle A Nilson; David H Price
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

5.  Dual-Channel Stopped-Flow Apparatus for Simultaneous Fluorescence, Anisotropy, and FRET Kinetic Data Acquisition for Binary and Ternary Biological Complexes.

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Journal:  Biosensors (Basel)       Date:  2020-11-19

6.  DOT1L complex regulates transcriptional initiation in human erythroleukemic cells.

Authors:  Aiwei Wu; Junhong Zhi; Tian Tian; Ali Cihan; Murat A Cevher; Ziling Liu; Yael David; Tom W Muir; Robert G Roeder; Ming Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-06       Impact factor: 12.779

7.  Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae.

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Journal:  Genome Biol       Date:  2020-06-02       Impact factor: 13.583

8.  Quantitative imaging of transcription in living Drosophila embryos reveals the impact of core promoter motifs on promoter state dynamics.

Authors:  Virginia L Pimmett; Matthieu Dejean; Carola Fernandez; Antonio Trullo; Edouard Bertrand; Ovidiu Radulescu; Mounia Lagha
Journal:  Nat Commun       Date:  2021-07-23       Impact factor: 14.919

Review 9.  The Causes and Consequences of Spatial Organization of the Genome in Regulation of Gene Expression.

Authors:  Marios Agelopoulos; Spyros Foutadakis; Dimitris Thanos
Journal:  Front Immunol       Date:  2021-06-04       Impact factor: 7.561

10.  The Pol II preinitiation complex (PIC) influences Mediator binding but not promoter-enhancer looping.

Authors:  Fei Sun; Terrence Sun; Michael Kronenberg; Xianglong Tan; Chengyang Huang; Michael F Carey
Journal:  Genes Dev       Date:  2021-07-22       Impact factor: 11.361

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