Literature DB >> 31298274

Reflection on modern methods: when worlds collide-prediction, machine learning and causal inference.

Tony Blakely1, John Lynch2, Koen Simons1, Rebecca Bentley1, Sherri Rose3.   

Abstract

Causal inference requires theory and prior knowledge to structure analyses, and is not usually thought of as an arena for the application of prediction modelling. However, contemporary causal inference methods, premised on counterfactual or potential outcomes approaches, often include processing steps before the final estimation step. The purposes of this paper are: (i) to overview the recent emergence of prediction underpinning steps in contemporary causal inference methods as a useful perspective on contemporary causal inference methods, and (ii) explore the role of machine learning (as one approach to 'best prediction') in causal inference. Causal inference methods covered include propensity scores, inverse probability of treatment weights (IPTWs), G computation and targeted maximum likelihood estimation (TMLE). Machine learning has been used more for propensity scores and TMLE, and there is potential for increased use in G computation and estimation of IPTWs.
© The Author(s) 2019; all rights reserved. Published by Oxford University Press on behalf of the International Epidemiological Association.

Keywords:  Machine learning; causal inference; potential outcomes; prediction

Year:  2021        PMID: 31298274     DOI: 10.1093/ije/dyz132

Source DB:  PubMed          Journal:  Int J Epidemiol        ISSN: 0300-5771            Impact factor:   7.196


  12 in total

1.  On the Convergence of Epidemiology, Biostatistics, and Data Science.

Authors:  Neal D Goldstein; Michael T LeVasseur; Leslie A McClure
Journal:  Harv Data Sci Rev       Date:  2020-04-30

Review 2.  Big data, machine learning, and population health: predicting cognitive outcomes in childhood.

Authors:  Andrea K Bowe; Gordon Lightbody; Anthony Staines; Deirdre M Murray
Journal:  Pediatr Res       Date:  2022-06-09       Impact factor: 3.953

Review 3.  Proposed Requirements for Cardiovascular Imaging-Related Machine Learning Evaluation (PRIME): A Checklist: Reviewed by the American College of Cardiology Healthcare Innovation Council.

Authors:  Partho P Sengupta; Sirish Shrestha; Béatrice Berthon; Emmanuel Messas; Erwan Donal; Geoffrey H Tison; James K Min; Jan D'hooge; Jens-Uwe Voigt; Joel Dudley; Johan W Verjans; Khader Shameer; Kipp Johnson; Lasse Lovstakken; Mahdi Tabassian; Marco Piccirilli; Mathieu Pernot; Naveena Yanamala; Nicolas Duchateau; Nobuyuki Kagiyama; Olivier Bernard; Piotr Slomka; Rahul Deo; Rima Arnaout
Journal:  JACC Cardiovasc Imaging       Date:  2020-09

4.  Enabling personalized decision support with patient-generated data and attributable components.

Authors:  Elliot G Mitchell; Esteban G Tabak; Matthew E Levine; Lena Mamykina; David J Albers
Journal:  J Biomed Inform       Date:  2020-12-13       Impact factor: 6.317

5.  Use of directed acyclic graphs (DAGs) to identify confounders in applied health research: review and recommendations.

Authors:  Peter W G Tennant; Eleanor J Murray; Kellyn F Arnold; Laurie Berrie; Matthew P Fox; Sarah C Gadd; Wendy J Harrison; Claire Keeble; Lynsie R Ranker; Johannes Textor; Georgia D Tomova; Mark S Gilthorpe; George T H Ellison
Journal:  Int J Epidemiol       Date:  2021-05-17       Impact factor: 7.196

6.  AIPW: An R Package for Augmented Inverse Probability-Weighted Estimation of Average Causal Effects.

Authors:  Yongqi Zhong; Edward H Kennedy; Lisa M Bodnar; Ashley I Naimi
Journal:  Am J Epidemiol       Date:  2021-12-01       Impact factor: 5.363

7.  Recommendations for the use of propensity score methods in multiple sclerosis research.

Authors:  Gabrielle Simoneau; Fabio Pellegrini; Thomas Pa Debray; Julie Rouette; Johanna Muñoz; Robert W Platt; John Petkau; Justin Bohn; Changyu Shen; Carl de Moor; Mohammad Ehsanul Karim
Journal:  Mult Scler       Date:  2022-04-06       Impact factor: 5.855

Review 8.  A scoping review of causal methods enabling predictions under hypothetical interventions.

Authors:  Lijing Lin; Matthew Sperrin; David A Jenkins; Glen P Martin; Niels Peek
Journal:  Diagn Progn Res       Date:  2021-02-04

9.  G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes.

Authors:  Florent Le Borgne; Arthur Chatton; Maxime Léger; Rémi Lenain; Yohann Foucher
Journal:  Sci Rep       Date:  2021-01-14       Impact factor: 4.379

10.  Developing a prediction model to estimate the true burden of respiratory syncytial virus (RSV) in hospitalised children in Western Australia.

Authors:  Amanuel Tesfay Gebremedhin; Alexandra B Hogan; Christopher C Blyth; Kathryn Glass; Hannah C Moore
Journal:  Sci Rep       Date:  2022-01-10       Impact factor: 4.379

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