Literature DB >> 31297788

Efficient computational model for identification of antitubercular peptides by integrating amino acid patterns and properties.

Shamima Khatun1, Mehedi Hasan1, Hiroyuki Kurata1,2.   

Abstract

Tuberculosis (TB) is a leading killer caused by Mycobacterium tuberculosis. Recently, anti-TB peptides have provided an alternative approach to combat antibiotic tolerance. We have developed an effective computational predictor, identification of antitubercular peptides (iAntiTB), by the integration of multiple feature vectors deriving from the amino acid sequences via random forest (RF) and support vector machine (SVM) classifiers. The iAntiTB combines the RF and SVM scores via linear regression to enhance the prediction accuracy. To make a robust and accurate predictor, we prepared the two datasets with different types of negative samples. The iAntiTB achieved area under the ROC curve values of 0.896 and 0.946 on the training datasets of the first and second datasets, respectively. The iAntiTB outperformed the other existing predictors.
© 2019 Federation of European Biochemical Societies.

Entities:  

Keywords:  zzm321990Mycobacterium tuberculosiszzm321990; antitubercular peptide; feature encoding; linear regression; machine learning

Year:  2019        PMID: 31297788     DOI: 10.1002/1873-3468.13536

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

1.  TUPDB: Target-Unrelated Peptide Data Bank.

Authors:  Bifang He; Shanshan Yang; Jinjin Long; Xue Chen; Qianyue Zhang; Hui Gao; Heng Chen; Jian Huang
Journal:  Interdiscip Sci       Date:  2021-05-16       Impact factor: 2.233

2.  POTN: A Human Leukocyte Antigen-A2 Immunogenic Peptides Screening Model and Its Applications in Tumor Antigens Prediction.

Authors:  Qingqing Meng; Yahong Wu; Xinghua Sui; Jingjie Meng; Tingting Wang; Yan Lin; Zhiwei Wang; Xiuman Zhou; Yuanming Qi; Jiangfeng Du; Yanfeng Gao
Journal:  Front Immunol       Date:  2020-10-07       Impact factor: 7.561

3.  MPMABP: A CNN and Bi-LSTM-Based Method for Predicting Multi-Activities of Bioactive Peptides.

Authors:  You Li; Xueyong Li; Yuewu Liu; Yuhua Yao; Guohua Huang
Journal:  Pharmaceuticals (Basel)       Date:  2022-06-03

4.  i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation.

Authors:  Md Mehedi Hasan; Balachandran Manavalan; Watshara Shoombuatong; Mst Shamima Khatun; Hiroyuki Kurata
Journal:  Plant Mol Biol       Date:  2020-03-05       Impact factor: 4.076

5.  i4mC-Mouse: Improved identification of DNA N4-methylcytosine sites in the mouse genome using multiple encoding schemes.

Authors:  Md Mehedi Hasan; Balachandran Manavalan; Watshara Shoombuatong; Mst Shamima Khatun; Hiroyuki Kurata
Journal:  Comput Struct Biotechnol J       Date:  2020-04-08       Impact factor: 7.271

6.  PUP-Fuse: Prediction of Protein Pupylation Sites by Integrating Multiple Sequence Representations.

Authors:  Firda Nurul Auliah; Andi Nur Nilamyani; Watshara Shoombuatong; Md Ashad Alam; Md Mehedi Hasan; Hiroyuki Kurata
Journal:  Int J Mol Sci       Date:  2021-02-20       Impact factor: 5.923

Review 7.  Use of Artificial Intelligence and Machine Learning for Discovery of Drugs for Neglected Tropical Diseases.

Authors:  David A Winkler
Journal:  Front Chem       Date:  2021-03-15       Impact factor: 5.221

8.  IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations.

Authors:  Md Mehedi Hasan; Md Ashad Alam; Watshara Shoombuatong; Hiroyuki Kurata
Journal:  J Comput Aided Mol Des       Date:  2021-01-04       Impact factor: 3.686

Review 9.  Evolution of Sequence-based Bioinformatics Tools for Protein-protein Interaction Prediction.

Authors:  Mst Shamima Khatun; Watshara Shoombuatong; Md Mehedi Hasan; Hiroyuki Kurata
Journal:  Curr Genomics       Date:  2020-09       Impact factor: 2.236

10.  PredNTS: Improved and Robust Prediction of Nitrotyrosine Sites by Integrating Multiple Sequence Features.

Authors:  Andi Nur Nilamyani; Firda Nurul Auliah; Mohammad Ali Moni; Watshara Shoombuatong; Md Mehedi Hasan; Hiroyuki Kurata
Journal:  Int J Mol Sci       Date:  2021-03-08       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.