| Literature DB >> 31297788 |
Shamima Khatun1, Mehedi Hasan1, Hiroyuki Kurata1,2.
Abstract
Tuberculosis (TB) is a leading killer caused by Mycobacterium tuberculosis. Recently, anti-TB peptides have provided an alternative approach to combat antibiotic tolerance. We have developed an effective computational predictor, identification of antitubercular peptides (iAntiTB), by the integration of multiple feature vectors deriving from the amino acid sequences via random forest (RF) and support vector machine (SVM) classifiers. The iAntiTB combines the RF and SVM scores via linear regression to enhance the prediction accuracy. To make a robust and accurate predictor, we prepared the two datasets with different types of negative samples. The iAntiTB achieved area under the ROC curve values of 0.896 and 0.946 on the training datasets of the first and second datasets, respectively. The iAntiTB outperformed the other existing predictors.Entities:
Keywords: zzm321990Mycobacterium tuberculosiszzm321990; antitubercular peptide; feature encoding; linear regression; machine learning
Year: 2019 PMID: 31297788 DOI: 10.1002/1873-3468.13536
Source DB: PubMed Journal: FEBS Lett ISSN: 0014-5793 Impact factor: 4.124