Literature DB >> 31296406

Making the Most of Trait-Based Approaches for Microbial Ecology.

Geneviève Lajoie1, Steven W Kembel2.   

Abstract

There is an increasing interest in applying trait-based approaches to microbial ecology, but the question of how and why to do it is still lagging behind. By anchoring our discussion of these questions in a framework derived from epistemology, we broaden the scope of trait-based approaches to microbial ecology from one oriented mostly around explanation towards one inclusive of the predictive and integrative potential of these approaches. We use case studies from macro-organismal ecology to concretely show how these goals for knowledge development can be fulfilled and propose clear directions, adapted to the biological reality of microbes, to make the most of recent advancements in the measurement of microbial phenotypes and traits.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  adaptive variation; explanation; functional traits; generalization; integration; knowledge transfer; microbial ecology; prediction

Year:  2019        PMID: 31296406     DOI: 10.1016/j.tim.2019.06.003

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  7 in total

Review 1.  Open Science principles for accelerating trait-based science across the Tree of Life.

Authors:  Rachael V Gallagher; Daniel S Falster; Brian S Maitner; Roberto Salguero-Gómez; Vigdis Vandvik; William D Pearse; Florian D Schneider; Jens Kattge; Jorrit H Poelen; Joshua S Madin; Markus J Ankenbrand; Caterina Penone; Xiao Feng; Vanessa M Adams; John Alroy; Samuel C Andrew; Meghan A Balk; Lucie M Bland; Brad L Boyle; Catherine H Bravo-Avila; Ian Brennan; Alexandra J R Carthey; Renee Catullo; Brittany R Cavazos; Dalia A Conde; Steven L Chown; Belen Fadrique; Heloise Gibb; Aud H Halbritter; Jennifer Hammock; J Aaron Hogan; Hamish Holewa; Michael Hope; Colleen M Iversen; Malte Jochum; Michael Kearney; Alexander Keller; Paula Mabee; Peter Manning; Luke McCormack; Sean T Michaletz; Daniel S Park; Timothy M Perez; Silvia Pineda-Munoz; Courtenay A Ray; Maurizio Rossetto; Hervé Sauquet; Benjamin Sparrow; Marko J Spasojevic; Richard J Telford; Joseph A Tobias; Cyrille Violle; Ramona Walls; Katherine C B Weiss; Mark Westoby; Ian J Wright; Brian J Enquist
Journal:  Nat Ecol Evol       Date:  2020-02-17       Impact factor: 15.460

Review 2.  Ecological modelling approaches for predicting emergent properties in microbial communities.

Authors:  Naomi Iris van den Berg; Daniel Machado; Sophia Santos; Isabel Rocha; Jeremy Chacón; William Harcombe; Sara Mitri; Kiran R Patil
Journal:  Nat Ecol Evol       Date:  2022-05-16       Impact factor: 19.100

Review 3.  Life and death in the soil microbiome: how ecological processes influence biogeochemistry.

Authors:  Noah W Sokol; Eric Slessarev; Gianna L Marschmann; Alexa Nicolas; Steven J Blazewicz; Eoin L Brodie; Mary K Firestone; Megan M Foley; Rachel Hestrin; Bruce A Hungate; Benjamin J Koch; Bram W Stone; Matthew B Sullivan; Olivier Zablocki; Jennifer Pett-Ridge
Journal:  Nat Rev Microbiol       Date:  2022-02-28       Impact factor: 78.297

4.  Life-history strategies of soil microbial communities in an arid ecosystem.

Authors:  Yongjian Chen; Julia W Neilson; Priyanka Kushwaha; Raina M Maier; Albert Barberán
Journal:  ISME J       Date:  2020-10-13       Impact factor: 10.302

5.  Linking Genes to Traits in Fungi.

Authors:  A L Romero-Olivares; E W Morrison; A Pringle; S D Frey
Journal:  Microb Ecol       Date:  2021-01-22       Impact factor: 4.552

Review 6.  Inferring microbiota functions from taxonomic genes: a review.

Authors:  Christophe Djemiel; Pierre-Alain Maron; Sébastien Terrat; Samuel Dequiedt; Aurélien Cottin; Lionel Ranjard
Journal:  Gigascience       Date:  2022-01-12       Impact factor: 6.524

7.  Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Methylobacterium Diversity.

Authors:  Jean-Baptiste Leducq; Émilie Seyer-Lamontagne; Domitille Condrain-Morel; Geneviève Bourret; David Sneddon; James A Foster; Christopher J Marx; Jack M Sullivan; B Jesse Shapiro; Steven W Kembel
Journal:  mBio       Date:  2022-01-25       Impact factor: 7.867

  7 in total

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