Literature DB >> 31295059

Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes.

John H Postlethwait1, Joaquin Navajas Acedo2, Tatjana Piotrowski2.   

Abstract

To adequately connect zebrafish medical models to human biology, it is essential that gene nomenclature reflects gene orthology. Analysis of gene phylogenies and conserved syntenies shows that the zebrafish gene currently called wnt11 (ENSDARG00000004256, ZFIN ID: ZDB-GENE-990603-12) is not the ortholog of the human gene called WNT11 (ENSG00000085741); instead, the gene currently called wnt11r (ENSDARG00000014796, ZFIN ID: ZDB-GENE-980526-249) is the zebrafish ortholog of human WNT11. Genomic analysis of Wnt11-family genes suggests a model for the birth of Wnt11-family gene ohnologs in genome duplication events, provides a mechanism for the death of a Wnt11-family ohnolog in mammals after they diverged from birds, and suggests revised nomenclature to better connect teleost disease models to human biology.

Entities:  

Keywords:  Wnt signaling; Wnt11; Wnt11r; conserved synteny; ohnolog; whole-genome duplication

Mesh：

Substances：

Year:  2019        PMID： 31295059      PMCID： PMC6765064          DOI： 10.1089/zeb.2019.1760

Source DB:  PubMed          Journal:  Zebrafish        ISSN： 1545-8547            Impact factor:   1.985


  35 in total

1.  Secreted AGR2 promotes invasion of colorectal cancer cells via Wnt11-mediated non-canonical Wnt signaling.

Authors:  Shaobo Tian; Jia Hu; Kaixiong Tao; Jian Wang; Yanan Chu; Jing Li; Zhibo Liu; Xueliang Ding; Luming Xu; Qilin Li; Ming Cai; Jinbo Gao; Xiaoming Shuai; Guobin Wang; Lin Wang; Zheng Wang
Journal:  Exp Cell Res       Date:  2018-02-07       Impact factor: 3.905

2.  Maternal wnt11 activates the canonical wnt signaling pathway required for axis formation in Xenopus embryos.

Authors:  Qinghua Tao; Chika Yokota; Helbert Puck; Matt Kofron; Bilge Birsoy; Dong Yan; Makoto Asashima; Christopher C Wylie; Xinhua Lin; Janet Heasman
Journal:  Cell       Date:  2005-03-25       Impact factor: 41.582

3.  Comparative genomics and proteomics of vertebrate diacylglycerol acyltransferase (DGAT), acyl CoA wax alcohol acyltransferase (AWAT) and monoacylglycerol acyltransferase (MGAT).

Authors:  Roger S Holmes
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2009-10-02       Impact factor: 2.674

4.  Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.

Authors:  Olivier Jaillon; Jean-Marc Aury; Frédéric Brunet; Jean-Louis Petit; Nicole Stange-Thomann; Evan Mauceli; Laurence Bouneau; Cécile Fischer; Catherine Ozouf-Costaz; Alain Bernot; Sophie Nicaud; David Jaffe; Sheila Fisher; Georges Lutfalla; Carole Dossat; Béatrice Segurens; Corinne Dasilva; Marcel Salanoubat; Michael Levy; Nathalie Boudet; Sergi Castellano; Véronique Anthouard; Claire Jubin; Vanina Castelli; Michael Katinka; Benoît Vacherie; Christian Biémont; Zineb Skalli; Laurence Cattolico; Julie Poulain; Véronique De Berardinis; Corinne Cruaud; Simone Duprat; Philippe Brottier; Jean-Pierre Coutanceau; Jérôme Gouzy; Genis Parra; Guillaume Lardier; Charles Chapple; Kevin J McKernan; Paul McEwan; Stephanie Bosak; Manolis Kellis; Jean-Nicolas Volff; Roderic Guigó; Michael C Zody; Jill Mesirov; Kerstin Lindblad-Toh; Bruce Birren; Chad Nusbaum; Daniel Kahn; Marc Robinson-Rechavi; Vincent Laudet; Vincent Schachter; Francis Quétier; William Saurin; Claude Scarpelli; Patrick Wincker; Eric S Lander; Jean Weissenbach; Hugues Roest Crollius
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

5.  Wnt11-R, a protein closely related to mammalian Wnt11, is required for heart morphogenesis in Xenopus.

Authors:  Robert J Garriock; Susan L D'Agostino; Karen C Pilcher; Paul A Krieg
Journal:  Dev Biol       Date:  2005-03-01       Impact factor: 3.582

6.  Non-canonical Wnt signaling through Wnt5a/b and a novel Wnt11 gene, Wnt11b, regulates cell migration during avian gastrulation.

Authors:  Katharine M Hardy; Robert J Garriock; Tatiana A Yatskievych; Susan L D'Agostino; Parker B Antin; Paul A Krieg
Journal:  Dev Biol       Date:  2008-05-29       Impact factor: 3.582

7.  Identification of Wnt Genes Expressed in Neural Progenitor Zones during Zebrafish Brain Development.

Authors:  Robert N Duncan; Samin Panahi; Tatjana Piotrowski; Richard I Dorsky
Journal:  PLoS One       Date:  2015-12-29       Impact factor: 3.240

8.  Tbx1 controls the morphogenesis of pharyngeal pouch epithelia through mesodermal Wnt11r and Fgf8a.

Authors:  Chong Pyo Choe; J Gage Crump
Journal:  Development       Date:  2014-08-19       Impact factor: 6.868

9.  Ensembl's 10th year.

Authors:  Paul Flicek; Bronwen L Aken; Benoit Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Julio Fernandez-Banet; Leo Gordon; Stefan Gräf; Syed Haider; Martin Hammond; Kerstin Howe; Andrew Jenkinson; Nathan Johnson; Andreas Kähäri; Damian Keefe; Stephen Keenan; Rhoda Kinsella; Felix Kokocinski; Gautier Koscielny; Eugene Kulesha; Daniel Lawson; Ian Longden; Tim Massingham; William McLaren; Karine Megy; Bert Overduin; Bethan Pritchard; Daniel Rios; Magali Ruffier; Michael Schuster; Guy Slater; Damian Smedley; Giulietta Spudich; Y Amy Tang; Stephen Trevanion; Albert Vilella; Jan Vogel; Simon White; Steven P Wilder; Amonida Zadissa; Ewan Birney; Fiona Cunningham; Ian Dunham; Richard Durbin; Xosé M Fernández-Suarez; Javier Herrero; Tim J P Hubbard; Anne Parker; Glenn Proctor; James Smith; Stephen M J Searle
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

10.  Fanconi anemia: young patients at high risk for squamous cell carcinoma.

Authors:  Eunike Velleuer; Ralf Dietrich
Journal:  Mol Cell Pediatr       Date:  2014-11-01
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  3 in total

1.  Wnt11 acts on dermomyotome cells to guide epaxial myotome morphogenesis.

Authors:  Ann Kathrin Heilig; Ryohei Nakamura; Atsuko Shimada; Yuka Hashimoto; Yuta Nakamura; Joachim Wittbrodt; Hiroyuki Takeda; Toru Kawanishi
Journal:  Elife       Date:  2022-05-06       Impact factor: 8.713

2.  A Dominant Heterozygous Mutation in COG4 Causes Saul-Wilson Syndrome, a Primordial Dwarfism, and Disrupts Zebrafish Development via Wnt Signaling.

Authors:  Zhi-Jie Xia; Xin-Xin I Zeng; Mitali Tambe; Bobby G Ng; P Duc S Dong; Hudson H Freeze
Journal:  Front Cell Dev Biol       Date:  2021-09-14

3.  A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish.

Authors:  Erin Jimenez; Claire C Slevin; Wei Song; Zelin Chen; Stephen C Frederickson; Derek Gildea; Weiwei Wu; Abdel G Elkahloun; Ivan Ovcharenko; Shawn M Burgess
Journal:  Cell Genom       Date:  2022-08-22
  3 in total

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