| Literature DB >> 31293647 |
Feng Wu1, Zhongyuan Yin2, Lin Yang3, Jinshuo Fan1, Juanjuan Xu1, Yang Jin1, Jizhang Yu4, Dan Zhang2, Guanghai Yang4.
Abstract
Purpose: Smoking is a strong relative risk factor for lung cancer. Extracellular vesicles (EVs), particularly exosomes, have been implicated in cancers. In this study, we characterized smoking induced extracellular vesicles in smokers with non-small cell lung cancer (NSCLC).Entities:
Keywords: NSCLC; extracellular vesicles; smoker; tumor associated antigens
Year: 2019 PMID: 31293647 PMCID: PMC6603414 DOI: 10.7150/jca.30425
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Figure 1Higher EV concentration with smoking. A. Exosomal phenotyped EVs were examined by flow cytometric analysis. B. Cross-sectional cohort analysis of EV concentration in 14 smokers and 17 NSCLC patients compared to 14 healthy subjects. C. EVs concentrations when isolated by differential ultracentrifugation protocols.
Exosomal microRNAs were differentially expressed in smokers and lung cancer patients.
| Smokers vs. Controls | Smokers vs. Controls | NSCLC vs. Smokers | NSCLC vs. Smokers | |
|---|---|---|---|---|
| miR-Name | Fold change | Adjusted p-value | Fold change | Adjusted p-value |
| 5.924 | 0.00117 | 1.954 | 0.00651 | |
| 25.386 | 0.00753 | 2.502 | 0.00693 | |
| 3.373 | 0.00776 | 4.415 | 0.00758 | |
| 3.117 | 0.00530 | 5.054 | 0.00832 | |
| 2.752 | 0.00498 | 1.584 | 0.00856 | |
| 4.272 | 0.00984 | 2.971 | 0.00856 | |
| 7.593 | 0.00283 | 1.555 | 0.00896 | |
| 19.105 | 0.00434 | 0.969 | 0.00901 | |
| 2.527 | 0.00183 | 0.550 | 0.00920 | |
| 3.013 | 0.00279 | 3.165 | 0.00977 | |
| 4.099 | 0.00068 | 3.484 | 0.01044 | |
| 6.447 | 0.04052 | 2.709 | 0.01051 | |
| 8.507 | 0.00990 | 1.005 | 0.01184 | |
| 5.409 | 0.00632 | 1.482 | 0.01249 | |
| 2.534 | 0.00737 | 1.621 | 0.01374 | |
| 3.331 | 0.00361 | 2.423 | 0.01441 | |
| 2.967 | 0.00034 | 7.238 | 0.01452 | |
| 3.319 | 0.00367 | 1.797 | 0.01453 | |
| 8.561 | 0.00136 | 1.086 | 0.01798 | |
| 4.142 | 0.00709 | 0.873 | 0.01933 | |
| 5.924 | 0.00789 | 2.310 | 0.01988 | |
| 0.093 | 0.00201 | 0.149 | 0.02065 | |
| 0.25 | 0.00794 | 0.155 | 0.02155 | |
| 0.066 | 0.00503 | 0.059 | 0.02222 | |
| 0.358 | 0.00065 | 0.492 | 0.02229 | |
| 0.127 | 0.00442 | 0.168 | 0.02281 | |
| 0.254 | 0.00921 | 0.176 | 0.02477 | |
| 0.039 | 0.00665 | 0.130 | 0.02683 | |
| 0.108 | 0.00482 | 0.149 | 0.03087 | |
| 0.284 | 0.00677 | 0.085 | 0.03176 | |
| 0.143 | 0.01742 | 0.163 | 0.00065 |
Figure 2Heatmap of BAL exosomal differential miRNA profiles in smokers and NSCLC patients. Heatmap representation of the mean fold change in smokers and NSCLC patients related differential miRNA signature. Two-dimensional grid matrix displaying 31 exosomal miRNAs in BAL was obtained by the functional heat-map in R. Columns refer to time course comparison: 48 healthy controls, 26 smokers and 26 NSCLC patients. Rows stand for the 31 differential miRNAs. Each entry of the grid refers to relative fold (log2) between the expression level of a given exosomal miRNA. The color of each entry is determined by the value of that fold difference, ranging from green (negative values) to red (positive values).
Biologic pathways enriched by differentially expressed smoking specific miRNAs.
| KEGG pathway | p-value | #genes | #miRNAs |
|---|---|---|---|
| Proteoglycans in cancer (hsa05205) | 7.197E-13 | 110 | 21 |
| Fatty acid biosynthesis (hsa00061) | 5.120E-10 | 5 | 5 |
| ErbB signaling pathway (hsa04012) | 7.282E-09 | 56 | 21 |
| Hippo signaling pathway (hsa04390) | 2.989E-07 | 76 | 21 |
| TGF-beta signaling pathway (hsa04350) | 6.440E-07 | 47 | 19 |
| Signaling pathways regulating pluripotency of stem cells (hsa04550) | 9.569E-07 | 74 | 21 |
| Pathways in cancer (hsa05200) | 8.143E-06 | 182 | 21 |
| Wnt signaling pathway (hsa04310) | 2.151E-05 | 74 | 21 |
| Renal cell carcinoma (hsa05211) | 4.700E-05 | 41 | 20 |
| Regulation of actin cytoskeleton (hsa04810) | 4.976E-05 | 106 | 21 |
| Ubiquitin mediated proteolysis (hsa04120) | 1.023E-04 | 71 | 21 |
| Rap1 signaling pathway (hsa04015) | 1.353E-04 | 103 | 21 |
| Glioma (hsa05214) | 1.353E-04 | 35 | 21 |
| AMPK signaling pathway (hsa04152) | 5.012E-04 | 64 | 20 |
| FoxO signaling pathway (hsa04068) | 5.472E-04 | 69 | 20 |
| Ras signaling pathway (hsa04014) | 5.472E-04 | 105 | 21 |
| Focal adhesion (hsa04510) | 6.650E-04 | 100 | 21 |
| mTOR signaling pathway (hsa04150) | 7.077E-04 | 37 | 18 |
| Gap junction (hsa04540) | 7.258E-04 | 45 | 19 |
| Thyroid hormone signaling pathway (hsa04919) | 8.249E-04 | 56 | 21 |
| Neurotrophin signaling pathway (hsa04722) | 8.352E-04 | 65 | 20 |
| Prolactin signaling pathway (hsa04917) | 9.840E-04 | 37 | 18 |
| Estrogen signaling pathway (hsa04915) | 9.963E-04 | 45 | 20 |
| Endocytosis (hsa04144) | 1.485E-03 | 96 | 22 |
| Circadian rhythm (hsa04710) | 1.690E-03 | 22 | 15 |
| Biotin metabolism (hsa00780) | 1.750E-03 | 2 | 3 |
| cGMP-PKG signaling pathway (hsa04022) | 1.750E-03 | 79 | 20 |
| Prostate cancer (hsa05215) | 1.829E-03 | 46 | 19 |
| Hedgehog signaling pathway (hsa04340) | 2.952E-03 | 30 | 15 |
| MAPK signaling pathway (hsa04010) | 3.214E-03 | 114 | 20 |
| Adrenergic signaling in cardiomyocytes (hsa04261) | 3.596E-03 | 65 | 20 |
| Sphingolipid signaling pathway (hsa04071) | 3.858E-03 | 57 | 19 |
| Non-small cell lung cancer (hsa05223) | 4.639E-03 | 30 | 20 |
| PI3K-Akt signaling pathway (hsa04151) | 4.970E-03 | 146 | 21 |
| Viral carcinogenesis (hsa05203) | 7.453E-03 | 81 | 20 |
| Oxytocin signaling pathway (hsa04921) | 7.453E-03 | 76 | 21 |
| Insulin signaling pathway (hsa04910) | 8.038E-03 | 67 | 20 |
| Glycosaminoglycan biosynthesis - heparan sulfate / heparin (hsa00534) | 8.620E-03 | 12 | 15 |
| Cell cycle (hsa04110) | 8.620E-03 | 57 | 20 |
| cAMP signaling pathway (hsa04024) | 8.620E-03 | 90 | 21 |
| Chronic myeloid leukemia (hsa05220) | 1.432E-02 | 38 | 20 |
| Adherens junction (hsa04520) | 1.547E-02 | 37 | 21 |
| Melanoma (hsa05218) | 1.685E-02 | 36 | 19 |
| Amphetamine addiction (hsa05031) | 1.685E-02 | 31 | 21 |
| Melanogenesis (hsa04916) | 1.794E-02 | 47 | 18 |
| Choline metabolism in cancer (hsa05231) | 1.953E-02 | 50 | 20 |
| T cell receptor signaling pathway (hsa04660) | 2.128E-02 | 50 | 20 |
| HIF-1 signaling pathway (hsa04066) | 2.981E-02 | 49 | 20 |
Figure 3Quantitative RT-PCR experiments were performed on EGFR, KRAS, ALK, MET, LKB1, BRAF, PIK3CA, RET, and ROS1 mRNAs by using BAL exosomal RNA isolated from 26 smokers, 26 NSCLC patients, and 48 healthy controls.
Figure 4Quantitative RT-PCR experiments were performed on nine lncRNAs including MALAT1, HOTAIR, HOTTIP, AGAP2-AS1, ATB, TCF7, FOXD2-AS1, HOXA11-AS, PCAF1, and BCAR4 by using BAL exosomal RNA isolated from 26 smokers, 26 NSCLC patients, and 48 healthy controls.
Figure 5Western blot to test HLA-class I, AKAP4, BAGE, PD-L1, MAGE-3, and Annexin-A2 protein levels in lung exosomes isolated from 5 healthy controls, 5 smokers, and 5 NSCLC patients. Annexin-V was loaded as a positive control.