| Literature DB >> 31293633 |
Yizi Wang1, Fang Ren1, Bo Li1, Zixuan Song1, Peng Chen1, Ling Ouyang1.
Abstract
Ellagic acid (EA) is a polyphenol found in several fruits and plants. EA has been reported to exert antitumor activity in many types of cancers. However, the effect and potential molecular mechanism of EA in endometrial cancer are still unclear. Therefore, the aim of this study was to explore the underlying antitumor function and targets by which EA inhibits endometrial cancer. By using multiplatform bioinformatics analysis tools, including DrugBank, STRING, WebGestalt and cBioPortal, the core targets of EA were identified as PIK3CA and PIK3R1. In addition, through transwell assays, EA was strongly found to inhibit cell invasion and migration. Based on CCK8 assays and flow cytometry, EA exhibited a suppressive effect on endometrial cancer cell proliferation by causing cell cycle arrest and inducing apoptosis. The results of real-time PCR confirmed that the expression of PIK3CA and PIK3R was decreased by EA. Furthermore, western blotting analysis demonstrated that EA inhibited PI3K phosphorylation, downregulating the expression of MMP9. In vivo, EA suppressed lung metastasis in BALB/c nude mice based on the SUVmax value determined from PET scans and HE staining. According to all these data, it comprehensively demonstrated the inhibitory effect of EA on endometrial cancer through bioinformatics analysis and experimental verification. Our findings suggest that EA may potentially be beneficial for treating endometrial cancer.Entities:
Keywords: Bioinformatics; DrugBank; WebGestalt; cBioPortal; ellagic acid; endometrial cancer
Year: 2019 PMID: 31293633 PMCID: PMC6603400 DOI: 10.7150/jca.29738
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Figure 1(A) Diagram of ellagic acid target proteins from the DrugBank database. (B) Network of the 17 EA-targeted proteins and their interactions from the STRING database (non-interacting proteins were removed).
The direct target of ellagic acid from Drugbank database
| Target | Gene Name | Actions | UniProt ID |
|---|---|---|---|
| Carbonic anhydrase 1 | CA1 | inhibitor | P00915 |
| Carbonic anhydrase 2 | CA2 | inhibitor | P00918 |
| Carbonic anhydrase 3 | CA3 | inhibitor | P07451 |
| Carbonic anhydrase 4 | CA4 | inhibitor | P22748 |
| Carbonic anhydrase 5A | CA5A | inhibitor | P35218 |
| Carbonic anhydrase 5B | CA5B | inhibitor | Q9Y2D0 |
| Carbonic anhydrase 6 | CA6 | inhibitor | P23280 |
| Carbonic anhydrase 7 | CA7 | inhibitor | P43166 |
| Carbonic anhydrase 9 | CA9 | inhibitor | Q16790 |
| Carbonic anhydrase 12 | CA12 | inhibitor | O43570 |
| Carbonic anhydrase 14 | CA14 | inhibitor | Q9ULX7 |
| Casein kinase II subunit alpha | CSNK2A1 | inhibitor | P68400 |
| cAMP-dependent protein kinase catalytic subunit alpha | PRKACA | inhibitor, competitive | P17612 |
| Protein kinase C alpha type | PRKCA | inhibitor, competitive | P17252 |
| Protein kinase C beta type | PRKCB | inhibitor, competitive | P05771 |
| Tyrosine-protein kinase SYK | SYK | inhibitor | P43405 |
| Squalene monooxygenase | SQLE | inhibitor | Q14534 |
KEGG pathway analysis in WebGestalt
| Pathway | No. of Gene | Entrez Gene | Statistics |
|---|---|---|---|
| HIF-1 signaling pathway | 31 | 1026 1387 1956 2064 207 2475 3091 4790 5290 5291 5293 5294 5295 54583 5578 5579 5604 596 6198 7422 7428 | C=103; O=21; E=1.49; R=14.09; P Value=0e+00; |
| Chemokine signaling pathway | 29 | 10451 1147 1399 207 23236 2885 3265 387 4790 4792 4893 5290 5291 5293 5294 5295 5566 5567 5568 5579 5580 5604 5879 6464 6654 673 7409 7410 998 | C=187; O=29; E=2.71; R=10.72; P Value=0e+00; |
| EGFR tyrosine kinase inhibitor resistance | 23 | 1956 2064 207 2475 2885 3265 4893 5290 5291 5293 5294 5295 5578 5579 5604 5728 581 596 6198 6464 6654 673 7422 | C=81; O=23; E=1.17; R=19.62; P Value=0e+00; |
| Endocrine resistance | 27 | 109 111 114 1956 2353 2475 2778 2885 3265 3725 5290 5294 5295 5566 5567 5594 5595 5599 572 5894 595 596 6198 6464 6714 673 7157 | C=98; O=27; E=1.42; R=19.04; P Value=0e+00; |
| ErbB signaling pathway | 25 | 1026 1399 1956 2064 207 2475 2885 3265 4609 4690 4893 5062 5290 5291 5293 5294 5295 5578 5579 5604 6198 6464 6654 673 867 | C=88; O=25; E=1.27; R=19.63; P Value=0e+00; |
| Focal adhesion | 28 | 10451 1399 1956 2064 207 2885 3265 387 4659 5062 5290 5291 5293 5294 5295 5578 5579 5604 5728 5879 596 6464 6654 673 7409 7410 7422 998 | C=203; O=28; E=2.94; R=9.53; P Value=0e+00; |
| Phospholipase D signaling pathway | 24 | 1956 207 2207 22808 23236 2475 2885 3265 387 4893 5290 5291 5293 5294 5295 5337 5338 5578 5604 6237 6464 6654 6850 9846 | C=144; O=24; E=2.08; R=11.52; P Value=0e+00; |
| PI3K-Akt signaling pathway | 46 | 1017 1026 1147 1956 207 2475 2885 3265 3667 4193 4609 4790 4893 5290 5291 5293 5294 5295 5578 5585 5586 5604 5728 5879 596 6198 6654 6850 7157 7422 930 | C=341; O=31; E=4.93; R=6.28; P Value=0e+00; |
| Sphingolipid signaling pathway | 23 | 207 2207 23236 3265 387 4790 4893 5290 5291 5293 5294 5295 5337 5338 5578 5579 5604 5728 581 5879 596 7157 9846 | C=120; O=23; E=1.74; R=13.24; P Value=0e+00; |
| Ras signaling pathway | 32 | 1147 1956 207 22808 27040 2885 3265 387 4790 4893 5062 5290 5291 5293 5294 5295 5337 5338 5566 5567 5568 5578 5579 5604 5879 6237 6464 6654 7422 7535 9846 998 | C=229; O=32; E=3.31; R=9.66; P Value=0e+00; |
The row lists the following statistics: C: the number of reference genes in the category; O: the number of genes in the gene set and also in the category; E: the expected number in the category; R: ratio of enrichment; pValue: p-value from hypergeometric test.
Figure 2(A) Overlapping of genes in the four pathways that were enriched in the WebGestalt database. (B) Genetic alterations of nine potential hub genes in endometrial carcinoma.
Figure 3Migration and invasion assays of KLE and AN3CA cells treated with the control or 20 µM EA. All the cells in five separate fields were counted under a microscope. Original magnification ×200. The data are shown as the means ± SD of three independent experiments. *** p<0.001
Figure 4(A) EA inhibits the proliferation of KLE and AN3CA cells in a time-dependent manner. **p<0.01; ***p<0.001. (B) EA induces cell cycle arrest in G1 phase in endometrial cancer cells. *** p<0.001.
Figure 5(A) EA increases apoptosis of KLE and AN3CA cells to 25% and 40%, respectively. ***p<0.001. (B) Real-time PCR verified that EA decreased the expression of PI3KCA and PIK3R1. The data are shown as the means ± SD. **p<0.01; ***p<0.001. (C) Western blotting analysis of PI3K, p-PI3K and MMP9 expression in KLE and AN3CA cells treated with or without EA.
Figure 6(A) PET scan showing that the SUVmax value was lower in the EA-treated group than in the control group. (B) Metastatic lesions in BALB/c nude mouse lungs stained by HE and the associated statistical data. The data are shown as the means ± SD. *p<0.05; **p<0.01.