Literature DB >> 31286543

Blood circRNAs as biomarkers for the diagnosis of community-acquired pneumonia.

Tian Zhao1, YaLi Zheng2, DengZai Hao1, Xuesong Jin1, QiongZhen Luo2, YaTao Guo2, DaiXi Li2, Wen Xi2, Yu Xu2, YuSheng Chen3, ZhanCheng Gao2, Yan Zhang1.   

Abstract

Circular RNAs (circRNAs) have been reported as effective diagnostic and therapeutic biomarkers in many diseases, but the potential of using this easy-to-monitor and highly stable materials for diagnosing Community-acquired pneumonia (CAP) remains unexplored. Here, aiming to identify potential CAP-related circRNAs in peripheral blood and seeking to deepen the understanding of how circRNA-miRNA-mRNA regulatory networks may contribute to CAP, we applied microarrays profiling analysis and identified 8296 differentially expressed (DE) circRNAs between patients with CAP (n = 6) and healthy controls (n = 6). Subsequently, we validated the accumulation trends for the top 100 DE circRNAs based on qPCR in an independent validation cohort (30 patients vs 30 controls), and ultimately identified a panel of four circRNAs that perform extremely well as sensitive and specific biomarkers for diagnosing CAP: hsa_circ_0018429 (area under the curve [AUC] = 0.8216), hsa_circ_0026579 (AUC = 0.7733), hsa_circ_0125357 (AUC = 0.7730), and hsa_circ_0099188 (AUC = 0.6978); combined as a panel (AUC = 0.8776). In addition, hsa_circ_0026579 exhibited good performance in differentiating viral from bacterial or mixed infection, with an AUC of 0.863. We also identified 10 miRNAs that most likely to interact with these four circRNAs, and then predicted 205 mRNA target genes. The KEGG pathway enrichment analysis suggested highly plausible functional implications related to inflammation and to virus-infection-related signaling pathways (such as HTLV-1 infection and hepatitis B infection). Thus, we generated a genetic network of potential CAP-related regulatory interactions that should inform future hypothesis-driven research into the causes and potential treatment of this widespread and frequently fatal disease.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  circRNA; community-acquired pneumonia; diagnostic biomarker

Year:  2019        PMID: 31286543     DOI: 10.1002/jcb.28863

Source DB:  PubMed          Journal:  J Cell Biochem        ISSN: 0730-2312            Impact factor:   4.429


  10 in total

1.  The Particular Expression Profiles of Circular RNA in Peripheral Blood of Myocardial Infarction Patients by RNA Sequencing.

Authors:  Qi Li; Yuanyong Wang; Yi An; Jianxun Wang; Yufang Gao
Journal:  Front Cardiovasc Med       Date:  2022-06-06

2.  Admission lysophosphatidylethanolamine acyltransferase level predicts the severity and prognosis of community-acquired pneumonia.

Authors:  Li Chen; Lili Zhao; Ying Shang; Yu Xu; Zhancheng Gao
Journal:  Infection       Date:  2021-03-10       Impact factor: 3.553

3.  Role of circRNAs in viral infection and their significance for diagnosis and treatment (Review).

Authors:  Yuyao Mo; Yuze Liu; Anni Lu; Hanyi Zhang; Lijun Tang
Journal:  Int J Mol Med       Date:  2021-03-31       Impact factor: 4.101

Review 4.  The potential of using blood circular RNA as liquid biopsy biomarker for human diseases.

Authors:  Guoxia Wen; Tong Zhou; Wanjun Gu
Journal:  Protein Cell       Date:  2020-11-01       Impact factor: 14.870

5.  Circ_0026579 alleviates LPS-induced WI-38 cells inflammation injury in infantile pneumonia.

Authors:  Yang Yu; Tingting Yang; Zhaozheng Ding; Yuan Cao
Journal:  Innate Immun       Date:  2022-01       Impact factor: 2.680

Review 6.  New insights on circular RNAs and their potential applications as biomarkers, therapeutic agents, and preventive vaccines in viral infections: with a glance at SARS-CoV-2.

Authors:  Nasim Rahmani-Kukia; Ardeshir Abbasi
Journal:  Mol Ther Nucleic Acids       Date:  2022-08-14       Impact factor: 10.183

7.  Selective packaged circular RNAs in milk extracellular vesicles during Staphylococcus aureus infection may have potential against bacterial infection.

Authors:  Shaoyang Ma; Mingze Niu; Zehua Hao; Miaomiao Liu; Chao Tong; Xin Zhao
Journal:  RNA Biol       Date:  2020-12-15       Impact factor: 4.652

8.  Soluble form of suppression of tumorigenicity-2 predicts clinical stability of inpatients with community-acquired pneumonia.

Authors:  Yifeng Zeng; Mingshan Xue; Teng Zhang; Shixue Sun; Runpei Lin; Ning Li; Peiyan Zheng; Yingjie Zhen; Haisheng Hu; Xiaohua Douglas Zhang; Baoqing Sun
Journal:  Exp Biol Med (Maywood)       Date:  2021-07-05

9.  Hsa_circularRNA_0079201 suppresses chondrocyte proliferation and endochondral ossification by regulating the microRNA‑140‑3p/SMAD2 signaling pathway in idiopathic short stature.

Authors:  Xijuan Liu; Chen Yan; Xueqiang Deng; Jingyu Jia
Journal:  Int J Mol Med       Date:  2020-09-25       Impact factor: 4.101

10.  Instability of circular RNAs in clinical tissue samples impairs their reliable expression analysis using RT-qPCR: from the myth of their advantage as biomarkers to reality.

Authors:  Hannah Rochow; Antonia Franz; Monika Jung; Sabine Weickmann; Bernhard Ralla; Ergin Kilic; Carsten Stephan; Annika Fendler; Klaus Jung
Journal:  Theranostics       Date:  2020-07-23       Impact factor: 11.556

  10 in total

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