| Literature DB >> 31285761 |
Yi Wen1, Hongxu Yang2, Junjie Wu1,3,4, Axian Wang1, Xiaodong Chen5, Sijun Hu6, Yuxing Zhang4, Ding Bai3, Zuolin Jin1.
Abstract
Periodontal ligament stem cells (PDLSCs) can repair alveolar bone defects in periodontitis in a microenvironment context-dependent manner. This study aimed to determine whether different extracellular matrices (ECMs) exert diverse effects on osteogenic differentiation of PDLSCs and accurately control alveolar bone defect repair.Entities:
Keywords: bone defect; extracellular matrix; osteogenic differentiation; periodontal ligament stem cells; type IV collagen A2
Mesh:
Substances:
Year: 2019 PMID: 31285761 PMCID: PMC6599665 DOI: 10.7150/thno.35914
Source DB: PubMed Journal: Theranostics ISSN: 1838-7640 Impact factor: 11.556
B-dECM/P-dECM distinct protein.
| UniProt AC | Gene Symbol | Razor + unique peptides | Fold Change | P Value | FDR |
|---|---|---|---|---|---|
| B9EGI2 | MPRIP | 30 | +∞ | 2.10E-07 | 1.15E-05 |
| Q16643 | DBN1 | 16 | +∞ | 4.60E-06 | 1.31E-04 |
| H7C2W9 | RPL31 | 6 | +∞ | 4.87E-10 | 3.18E-07 |
| Q71U02 | MYL9 | 3 | +∞ | 6.86E-07 | 3.20E-05 |
| Q5JR95 | RPS8 | 6 | +∞ | 2.44E-07 | 1.23E-05 |
| E9PMS6 | LMO7 | 30 | +∞ | 1.02E-04 | 2.66E-03 |
| P08572 | COL4A2 | 9 | +∞ | 1.22E-06 | 4.43E-05 |
| Q6NZ55 | RPL13 | 6 | +∞ | 1.47E-06 | 5.05E-05 |
| A8MUD9 | RPL7 | 6 | +∞ | 3.30E-08 | 3.60E-06 |
| B4DMJ6 | RPL4 | 6 | +∞ | 8.91E-07 | 3.89E-05 |
| Q9UM54-6 | MYO6 | 21 | +∞ | 2.72E-06 | 8.10E-05 |
| Q5QTS3 | RPL13A | 4 | +∞ | 1.07E-08 | 1.40E-06 |
| P62424 | RPL7A | 8 | +∞ | 4.07E-08 | 3.81E-06 |
| B3KPC7 | ARPC5L | 2 | +∞ | 1.17E-06 | 4.43E-05 |
| Q9H2D6-5 | TRIOBP | 5 | +∞ | 1.25E-07 | 9.07E-06 |
| Q96RW7 | HMCN1 | 32 | +∞ | 5.37E-05 | 1.46E-03 |
| Q9UHB6-4 | LIMA1 | 29 | 19.25 | 1.49E-02 | 2.22E-01 |
| O00159-2 | MYO1C | 55 | 9.17 | 7.39E-03 | 1.37E-01 |
| P35579 | MYH9 | 152 | 7.37 | 2.04E-04 | 5.13E-03 |
| P68032 | ACTC1 | 11 | 7.28 | 4.96E-02 | 5.01E-01 |
| Q86V58 | FBLN2 | 13 | 3.93 | 1.01E-02 | 1.70E-01 |
| Q53R19 | ARPC2 | 15 | 3.87 | 7.54E-03 | 1.37E-01 |
| Q53X45 | MRLC3 | 9 | 3.73 | 7.95E-03 | 1.41E-01 |
| G8JLA8 | TGFBI | 27 | 3.69 | 5.36E-03 | 1.06E-01 |
| F8W1R7 | MYL6 | 8 | 3.60 | 9.85E-04 | 2.22E-02 |
| P06396-2 | GSN | 24 | 3.15 | 1.61E-02 | 2.29E-01 |
| Q8WVW5 | ACTIN | 32 | 2.61 | 8.22E-04 | 1.92E-02 |
| Q86TY5 | LGALS3 | 7 | 0.43 | 8.74E-03 | 1.50E-01 |
| P98160 | HSPG2 | 115 | 0.42 | 1.47E-02 | 2.22E-01 |
| Q6NZX3 | NT5E | 29 | 0.38 | 4.75E-02 | 5.01E-01 |
| P04406 | GAPDH | 11 | 0.34 | 1.87E-02 | 2.61E-01 |
| Q2TNI1 | CAV1 | 8 | 0.34 | 1.21E-02 | 1.94E-01 |
| Q8NBH6 | FBLN1 | 16 | 0.33 | 3.12E-02 | 4.08E-01 |
| P04899 | GNAI2 | 12 | 0.32 | 1.36E-02 | 2.12E-01 |
| P09382 | LGALS1 | 6 | 0.28 | 2.70E-03 | 5.70E-02 |
| Q96PQ9 | LOX | 12 | 0.26 | 3.34E-03 | 6.83E-02 |
| Q96TF5 | MBP1 | 8 | 0.22 | 1.56E-02 | 2.27E-01 |
| D6RHH4 | GNB2L1 | 5 | -∞ | 2.04E-07 | 1.15E-05 |
| Q9BTV4 | TMEM43 | 6 | -∞ | 1.11E-07 | 9.05E-06 |
| F5GY03 | SPARC | 4 | -∞ | 2.20E-06 | 6.84E-05 |
| Q6UVY6 | MOXD1 | 10 | -∞ | 1.15E-06 | 4.43E-05 |
| P39059 | COL15A1 | 13 | -∞ | 1.80E-06 | 5.88E-05 |
| B2R7M1 | AT | 9 | -∞ | 6.27E-09 | 1.34E-06 |
| P08758 | ANXA5 | 14 | -∞ | 2.30E-09 | 7.53E-07 |
B-dECM and P-dECM protein MS with regulation of COL4A2.
| UniProt AC | Gene Symbol | B-dECM | B-dECM + COL4A2-siRNA | P value | P-dECM | P-dECM + LV-COL4A2 | P value |
|---|---|---|---|---|---|---|---|
| B9EGI2 | MPRIP | 2.14E+09[1.18E+08] | 2.58E+09[1.33E+08] | >0.999 | 0[0] | 0[0] | / |
| Q16643 | DBN1 | 2.06E+09[1.66E+08] | 2.17E+09[1.54E+08] | >0.999 | 0[0] | 0[0] | / |
| H7C2W9 | RPL31 | 7.29E+08[7.50E+07] | 7.01E+08[6.35E+07] | >0.999 | 0[0] | 0[0] | / |
| Q71U02 | MYL9 | 7.22E+08[3.69E+07] | 7.59E+08[4.72E+08] | >0.999 | 0[0] | 0[0] | / |
| Q5JR95 | RPS8 | 6.12E+08[2.52E+08] | 6.31E+08[3.53E+08] | >0.999 | 0[0] | 0[0] | / |
| E9PMS6 | LMO7 | 1.85E+09[2.60E+08] | 1.56E+09[2.85E+08] | >0.999 | 0[0] | 0[0] | / |
| P08572 | COL4A2 | 6.62E+08[4.75E+07] | 0[0] | <0.001 | 0[0] | 5.41E+08[1.35E+07] | <0.001 |
| Q6NZ55 | RPL13 | 5.90E+08[3.38E+08] | 6.24E+08[3.76E+08] | >0.999 | 0[0] | 0[0] | / |
| A8MUD9 | RPL7 | 4.64E+08[1.46E+08] | 5.13E+08[1.58E+08] | >0.999 | 0[0] | 0[0] | / |
| B4DMJ6 | RPL4 | 4.40E+08[2.48E+07] | 4.59E+08[1.97E+07] | >0.999 | 0[0] | 0[0] | / |
| Q9UM54-6 | MYO6 | 4.83E+08[4.21E+07] | 4.81E+08[4.56E+07] | >0.999 | 0[0] | 0[0] | / |
| Q5QTS3 | RPL13A | 3.65E+08[8.39E+07] | 3.99E+08[4.27E+07] | >0.999 | 0[0] | 0[0] | / |
| P62424 | RPL7A | 2.76E+08[7.59E+07] | 2.92E+08[5.31E+07] | >0.999 | 0[0] | 0[0] | / |
| B3KPC7 | ARPC5L | 1.36E+08[8.91E+07] | 1.51E+08[1.24E+07] | >0.999 | 0[0] | 0[0] | / |
| Q9H2D6-5 | TRIOBP | 8.23E+07[3.35E+07] | 7.68E+08[6.42E+07] | >0.999 | 0[0] | 0[0] | / |
| Q96RW7 | HMCN1 | 1.57E+08[2.29E+07] | 1.66E+08[1.94E+07] | >0.999 | 0[0] | 0[0] | / |
| Q9UHB6-4 | LIMA1 | 3.53E+09[2.29E+09] | 3.42E+09[6.39E+08] | >0.999 | 2.23E+08[1.33E+08] | 2.51E+08[5.43E+07] | >0.999 |
| O00159-2 | MYO1C | 1.07E+10[3.81E+09] | 1.11E+10[2.93E+09] | >0.999 | 1.26E+09[6.55E+08] | 1.36E+09[3.23E+08] | >0.999 |
| P35579 | MYH9 | 9.03E+10[1.61E+10] | 9.25E+10[9.17E+09] | >0.999 | 1.23E+10[2.39E+09] | 1.67E+10[2.58E+09] | >0.999 |
| P68032 | ACTC1 | 1.02E+11[7.33E+10] | 1.34E+11[6.53E+10] | 0.650 | 9.96E+09[2.26E+09] | 1.18E+10[4.25E+09] | >0.999 |
| Q86V58 | FBLN2 | 1.10E+10[3.70E+09] | 1.26E+10[2.93E+09] | >0.999 | 2.77E+09[9.11E+08] | 2.74E+09[5.23E+08] | >0.999 |
| Q53R19 | ARPC2 | 8.47E+08[3.09E+08] | 8.95E+08[1.47E+08] | >0.999 | 2.17E+08[7.40E+07] | 2.59E+08[4.66E+07] | >0.999 |
| Q53X45 | MRLC3 | 3.66E+09[1.20E+09] | 3.87E+09[1.39E+09] | >0.999 | 9.75E+08[3.16E+08] | 7.48E+08[1.12E+08] | >0.999 |
| G8JLA8 | TGFBI | 2.09E+10[8.37E+09] | 2.31E+10[4.36E+09] | >0.999 | 5.46E+09[9.17E+08] | 5.89E+09[7.25E+08] | >0.999 |
| F8W1R7 | MYL6 | 1.14E+10[2.20E+09] | 1.45E+10[7.25E+09] | >0.999 | 3.16E+09[5.31E+08] | 4.23E+09[6.14E+08] | >0.999 |
| P06396-2 | GSN | 2.06E+09[9.50E+08] | 2.35E+09[5.89E+08] | >0.999 | 6.21E+08[1.31E+08] | 7.13E+08[8.24E+07] | >0.999 |
| Q8WVW5 | ACTIN | 5.07E+11[4.09E+10] | 4.87E+11[1.01E+11] | 0.9989 | 1.96E+11[3.35E+10] | 1.73E+11[3.56E+10] | 0.126 |
| Q86TY5 | LGALS3 | 7.92E+08[1.45E+08] | 8.23E+08[1.25E+08] | >0.999 | 1.85E+09[4.41E+08] | 1.77E+09[2.59E+08] | >0.999 |
| P98160 | HSPG2 | 7.78E+10[2.58E+10] | 8.38E+10[1.14E+10] | >0.999 | 1.79E+11[3.14E+10] | 1.93E+11[3.26E+10] | 0.910 |
| Q6NZX3 | NT5E | 1.74E+10[9.55E+09] | 1.55E+10[3.94E+09] | >0.999 | 4.28E+10[1.24E+10] | 4.99E+10[5.85E+09] | >0.999 |
| P04406 | GAPDH | 1.14E+09[4.48E+08] | 1.23E+09[3.37E+08] | >0.999 | 3.22E+09[6.97E+08] | 5.26E+09[7.38E+08] | >0.999 |
| Q2TNI1 | CAV1 | 1.33E+09[2.55E+08] | 1.36E+09[4.25E+08] | >0.999 | 4.10E+09[1.37E+09] | 6.37E+09[9.13E+08] | >0.999 |
| Q8NBH6 | FBLN1 | 2.07E+10[8.37E+09] | 2.38E+10[5.31E+09] | >0.999 | 6.16E+10[2.38E+10] | 8.01E+10[9.26E+09] | 0.472 |
| P04899 | GNAI2 | 1.72E+09[5.73E+08] | 1.82E+09[3.17E+08] | >0.999 | 5.40E+09[1.91E+09] | 4.35E+09[6.49E+08] | >0.999 |
| P09382 | LGALS1 | 2.31E+09[4.56E+08] | 2.14E+09[4.93E+08] | >0.999 | 8.29E+09[2.25E+09] | 7.26E+09[8.77E+08] | >0.999 |
| Q96PQ9 | LOX | 5.03E+08[1.53E+08] | 5.37E+08[8.03E+07] | >0.999 | 1.90E+09[3.97E+08] | 2.57E+09[1.02E+09] | >0.999 |
| Q96TF5 | MBP1 | 3.50E+09[1.89E+09] | 3.77E+09[5.66E+08] | >0.999 | 1.44E+10[2.96E+09] | 1.13E+10[5.25E+09] | >0.999 |
| D6RHH4 | GNB2L1 | 0[0] | 0[0] | / | 1.84E+08[7.90E+07] | 1.63E+08[4.23E+07] | >0.999 |
| Q9BTV4 | TMEM43 | 0[0] | 0[0] | / | 3.30E+08[1.15E+08] | 4.66E+08[4.12E+07] | >0.999 |
| F5GY03 | SPARC | 0[0] | 0[0] | / | 7.80E+08[7.11E+08] | 9.25E+08[1.31E+08] | >0.999 |
| Q6UVY6 | MOXD1 | 0[0] | 0[0] | / | 1.18E+09[6.68E+08] | 8.34E+08[7.25E+07] | >0.999 |
| P39059 | COL15A1 | 0[0] | 0[0] | / | 1.48E+09[9.55E+08] | 1.96E+09[4.33E+08] | >0.999 |
| B2R7M1 | AT | 0[0] | 0[0] | / | 1.32E+09[2.68E+08] | 1.87E+09[3.56E+08] | >0.999 |
| P08758 | ANXA5 | 0[0] | 0[0] | / | 1.48E+09[2.28E+08] | 2.31E+09[5.76E+08] | >0.999 |