Literature DB >> 31284026

Optimization of data acquisition and analysis for fiber ball imaging.

Hunter G Moss1, Emilie T McKinnon2, G Russell Glenn3, Joseph A Helpern4, Jens H Jensen5.   

Abstract

The inverse Funk transform of high angular resolution diffusion imaging (HARDI) data provides an estimate for the fiber orientation density function (fODF) in white matter (WM). Since the inverse Funk transform is a straightforward linear transformation, this technique, referred to as fiber ball imaging (FBI), offers a practical means of calculating the fODF that avoids the need for a response function or nonlinear numerical fitting. Nevertheless, the accuracy of FBI depends on both the choice of b-value and the number of diffusion-encoding directions used to acquire the HARDI data. To inform the design of optimal scan protocols for its implementation, FBI predictions are investigated here with in vivo data from healthy adult volunteers acquired at 3 T for b-values spanning 1000 to 10,000 s/mm2, for diffusion-encoding directions varying in number from 30 to 256 and for TE ranging from 90 to 120 ms. Our results suggest b-values above 4000 s/mm2 with at least 64 diffusion-encoding directions are adequate to achieve reasonable accuracy with FBI for calculating axon-specific diffusion measures and for performing WM fiber tractography (WMFT).
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Axon; Diffusion MRI; Fiber ball imaging; Fiber orientation density function; Funk transform; White matter

Mesh:

Year:  2019        PMID: 31284026      PMCID: PMC6703926          DOI: 10.1016/j.neuroimage.2019.07.005

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  47 in total

1.  Wiring optimization in cortical circuits.

Authors:  Dmitri B Chklovskii; Thomas Schikorski; Charles F Stevens
Journal:  Neuron       Date:  2002-04-25       Impact factor: 17.173

2.  Evaluating kurtosis-based diffusion MRI tissue models for white matter with fiber ball imaging.

Authors:  Jens H Jensen; Emilie T McKinnon; G Russell Glenn; Joseph A Helpern
Journal:  NMR Biomed       Date:  2017-01-13       Impact factor: 4.044

3.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

4.  Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging.

Authors:  Ben Jeurissen; Alexander Leemans; Jacques-Donald Tournier; Derek K Jones; Jan Sijbers
Journal:  Hum Brain Mapp       Date:  2012-05-19       Impact factor: 5.038

5.  Comparison of NODDI and spherical mean signal for measuring intra-neurite volume fraction.

Authors:  Hua Li; Rahul Nikam; Vinay Kandula; Ho Ming Chow; Arabinda K Choudhary
Journal:  Magn Reson Imaging       Date:  2018-11-26       Impact factor: 2.546

6.  Fiber ball imaging.

Authors:  Jens H Jensen; G Russell Glenn; Joseph A Helpern
Journal:  Neuroimage       Date:  2015-10-01       Impact factor: 6.556

Review 7.  Mapping brain anatomical connectivity using white matter tractography.

Authors:  Mariana Lazar
Journal:  NMR Biomed       Date:  2010-08       Impact factor: 4.044

Review 8.  The role of tissue microstructure and water exchange in biophysical modelling of diffusion in white matter.

Authors:  Markus Nilsson; Danielle van Westen; Freddy Ståhlberg; Pia C Sundgren; Jimmy Lätt
Journal:  MAGMA       Date:  2013-02-27       Impact factor: 2.310

Review 9.  Water transport between CNS compartments: contributions of aquaporins and cotransporters.

Authors:  N MacAulay; T Zeuthen
Journal:  Neuroscience       Date:  2009-09-15       Impact factor: 3.590

10.  Measuring intra-axonal T2 in white matter with direction-averaged diffusion MRI.

Authors:  Emilie T McKinnon; Jens H Jensen
Journal:  Magn Reson Med       Date:  2018-12-02       Impact factor: 4.668

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  10 in total

1.  High fidelity fiber orientation density functions from fiber ball imaging.

Authors:  Hunter G Moss; Jens H Jensen
Journal:  NMR Biomed       Date:  2021-09-12       Impact factor: 4.044

2.  Associations of White Matter and Basal Ganglia Microstructure to Cognitive Fatigue Rate in Multiple Sclerosis.

Authors:  Cristina A F Román; Glenn R Wylie; John DeLuca; Bing Yao
Journal:  Front Neurol       Date:  2022-07-04       Impact factor: 4.086

3.  Impact of intra-axonal kurtosis on fiber orientation density functions estimated with fiber ball imaging.

Authors:  Jens H Jensen
Journal:  Magn Reson Med       Date:  2022-04-18       Impact factor: 3.737

4.  Brain Reserve in a Case of Cognitive Resilience to Severe Leukoaraiosis.

Authors:  Dana M Szeles; Nicholas J Milano; Hunter J Moss; Maria Vittoria Spampinato; Jens H Jensen; Andreana Benitez
Journal:  J Int Neuropsychol Soc       Date:  2020-06-16       Impact factor: 2.892

5.  Triple diffusion encoding MRI predicts intra-axonal and extra-axonal diffusion tensors in white matter.

Authors:  Sudhir Ramanna; Hunter G Moss; Emilie T McKinnon; Essa Yacoub; Joseph A Helpern; Jens H Jensen
Journal:  Magn Reson Med       Date:  2019-11-25       Impact factor: 4.668

6.  Fiber ball white matter modeling in focal epilepsy.

Authors:  Lorna Bryant; Emilie T McKinnon; James A Taylor; Jens H Jensen; Leonardo Bonilha; Christophe de Bezenac; Barbara A K Kreilkamp; Guleed Adan; Udo C Wieshmann; Shubhabrata Biswas; Anthony G Marson; Simon S Keller
Journal:  Hum Brain Mapp       Date:  2021-02-19       Impact factor: 5.038

7.  High b-value diffusion tractography: Abnormal axonal network organization associated with medication-refractory epilepsy.

Authors:  Ezequiel Gleichgerrcht; Simon S Keller; Lorna Bryant; Hunter Moss; Tanja S Kellermann; Shubhabrata Biswas; Anthony G Marson; Janina Wilmskoetter; Jens H Jensen; Leonardo Bonilha
Journal:  Neuroimage       Date:  2021-12-30       Impact factor: 6.556

8.  Optimized rectification of fiber orientation density function.

Authors:  Hunter G Moss; Jens H Jensen
Journal:  Magn Reson Med       Date:  2020-07-25       Impact factor: 4.668

9.  Impact of b-value on estimates of apparent fibre density.

Authors:  Sila Genc; Chantal M W Tax; Erika P Raven; Maxime Chamberland; Greg D Parker; Derek K Jones
Journal:  Hum Brain Mapp       Date:  2020-03-26       Impact factor: 5.038

10.  Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project.

Authors:  Rafael Neto Henriques; Marta M Correia; Maurizio Marrale; Elizabeth Huber; John Kruper; Serge Koudoro; Jason D Yeatman; Eleftherios Garyfallidis; Ariel Rokem
Journal:  Front Hum Neurosci       Date:  2021-07-19       Impact factor: 3.169

  10 in total

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