Literature DB >> 31283967

SATQPCR: Website for statistical analysis of real-time quantitative PCR data.

Corinne Rancurel1, Trang van Tran2, Céline Elie3, Frédérique Hilliou4.   

Abstract

SATQPCR is a web tool providing statistical analysis of real-time quantitative PCR data including all MIQE rules (gene efficiency, selection of reference genes and normalization with them). Our application is a quick tool that provides to the biologist, graphs as well as statistical tables summarizing their results with the chosen methods (t-test or ANOVA with Tukey test). The application is available at http://satqpcr.sophia.inra.fr with a demo dataset. Source code can be found at https://framagit.org/. SUPPLEMENTARY INFORMATION: Tutorials at http://satqpcr.sophia.inra.fr/cgi/help.cgi.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  Data analysis; MIQE; Real-time quantitative PCR; Statistics; Transcriptomic; Web-application

Mesh：

Year:  2019        PMID： 31283967     DOI： 10.1016/j.mcp.2019.07.001

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN： 0890-8508            Impact factor:   2.365


  10 in total

1.  qRAT: an R-based stand-alone application for relative expression analysis of RT-qPCR data.

Authors:  Daniel Flatschacher; Verena Speckbacher; Susanne Zeilinger
Journal:  BMC Bioinformatics       Date:  2022-07-19       Impact factor: 3.307

2.  Isolation and Characterization of primary human trabecular meshwork cells from segmental flow regions: New tools for understanding segmental flow.

Authors:  Julia Staverosky; Kamesh Dhamodaran; Ted Acott; VijayKrishna Raghunathan; Janice Vranka
Journal:  Exp Eye Res       Date:  2020-05-04       Impact factor: 3.467

3.  Therapeutic Effects of (5R)-5-Hydroxytriptolide on Fibroblast-Like Synoviocytes in Rheumatoid Arthritis via lncRNA WAKMAR2/miR-4478/E2F1/p53 Axis.

Authors:  Xinpeng Zhou; Duoli Xie; Jie Huang; Aiping Lu; Rongsheng Wang; Yehua Jin; Runrun Zhang; Cen Chang; Lingxia Xu; Linshuai Xu; Junyu Fan; Chao Liang; Dongyi He
Journal:  Front Immunol       Date:  2021-02-16       Impact factor: 7.561

4.  Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data.

Authors:  Gilles Maussion; Rhalena A Thomas; Iveta Demirova; Gracia Gu; Eddie Cai; Carol X-Q Chen; Narges Abdian; Theodore J P Strauss; Sabah Kelaï; Angela Nauleau-Javaudin; Lenore K Beitel; Nicolas Ramoz; Philip Gorwood; Thomas M Durcan
Journal:  Sci Rep       Date:  2021-10-29       Impact factor: 4.379

5.  Spodoptera frugiperda Sf9 cells as a model system to investigate the role of detoxification gene expression in response to xenobiotics.

Authors:  Dries Amezian; Sonja Mehlhorn; Calypso Vacher-Chicane; Ralf Nauen; Gaëlle Le Goff
Journal:  Curr Res Insect Sci       Date:  2022-04-18

6.  C3H Expression Is Crucial for Methyl Jasmonate Induction of Chicoric Acid Production by Echinacea purpurea (L.) Moench Cell Suspension Cultures.

Authors:  Laura Ravazzolo; Benedetto Ruperti; Marco Frigo; Oriana Bertaiola; Giovanna Pressi; Mario Malagoli; Silvia Quaggiotti
Journal:  Int J Mol Sci       Date:  2022-09-23       Impact factor: 6.208

7.  qPCRtools: An R package for qPCR data processing and visualization.

Authors:  Xiang Li; Yingmin Wang; Jingyu Li; Xinyue Mei; Yixiang Liu; Huichuan Huang
Journal:  Front Genet       Date:  2022-09-13       Impact factor: 4.772

8.  Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes.

Authors:  Priscila Grynberg; Roberto Coiti Togawa; Leticia Dias de Freitas; Jose Dijair Antonino; Corinne Rancurel; Marcos Mota do Carmo Costa; Maria Fatima Grossi-de-Sa; Robert N G Miller; Ana Cristina Miranda Brasileiro; Patricia Messenberg Guimaraes; Etienne G J Danchin
Journal:  Genes (Basel)       Date:  2020-11-13       Impact factor: 4.096

9.  Defining the combined stress response in wild Arachis.

Authors:  Ana Paula Zotta Mota; Ana Cristina Miranda Brasileiro; Bruna Vidigal; Thais Nicolini Oliveira; Andressa da Cunha Quintana Martins; Mario Alfredo de Passos Saraiva; Ana Claudia Guerra de Araújo; Roberto C Togawa; Maria Fatima Grossi-de-Sá; Patricia Messenberg Guimaraes
Journal:  Sci Rep       Date:  2021-05-27       Impact factor: 4.379

10.  A robust biostatistical method leverages informative but uncertainly determined qPCR data for biomarker detection, early diagnosis, and treatment.

Authors:  Wei Zhuang; Luísa Camacho; Camila S Silva; Michael Thomson; Kevin Snyder
Journal:  PLoS One       Date:  2022-01-31       Impact factor: 3.240
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.