Literature DB >> 31280336

A 14-bp stretch plays a critical role in regulating gene expression from β1-tubulin promoters of basidiomycetes.

Dong Xuan Nguyen1,2, Taku Sakaguchi1, Takehito Nakazawa1, Masahiro Sakamoto1, Yoichi Honda3.   

Abstract

Cis-acting elements play a vital role in regulation of transcription initiation. Several cis-acting elements have been identified in filamentous fungi; however, the fundamental requirements for basic promoter function in basidiomycetes are obscure. In this study, core elements in β1-tubulin promoters of basidiomycetes were functionally characterized. Using transient transformation in Ceriporiopsis subvermispora as a promoter assay, we found that a 14-bp region (β1-tubulin core promoter element, BCE), as well as CT-rich stretch, in the β1-tubulin promoter of the species played a critical role in the expression of a recombinant hph as a reporter gene. In addition, in silico analysis revealed other members of basidiomycetes also harboured the BCE motif as well as CT-rich stretch in the β1-tubulin promoter region, suggesting their functional conservation among the species of basidiomycetes. To confirm the function of BCE, we investigated the effects of BCE motif deletion in the Pleurotus ostreatus β1-tubulin promoter on expression levels of a recombinant luminous shrimp luciferase reporter gene, which was targeted into the Pofcy1 locus. Intriguingly, luciferase activity was abolished when the BCE motif was deleted in the β1-tubulin promoter, strongly demonstrating its essential function in transcription from this promoter on the chromosome. This study clearly demonstrates the crucial role of the BCE as well as the CT-rich stretch regions in the β1-tubulin promoter among basidiomycetes and provides new insights into the fundamental mechanism of transcription initiation in this group.

Entities:  

Keywords:  Basidiomycetes; Ceriporiopsis subvermispora; Core promoter element; Pleurotus ostreatus; Transient transformation; β1-tubulin gene

Year:  2019        PMID: 31280336     DOI: 10.1007/s00294-019-01014-5

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  48 in total

1.  Characterization of the promoter region of a cell-adhesion protein gene derived from the basidiomycete Lentinus edodes.

Authors:  O Kondoh; K Shishido
Journal:  FEMS Microbiol Lett       Date:  1995-08-01       Impact factor: 2.742

Review 2.  Core promoters in transcription: old problem, new insights.

Authors:  Ananda L Roy; Dinah S Singer
Journal:  Trends Biochem Sci       Date:  2015-02-10       Impact factor: 13.807

3.  Characterization of the highly active fragment of glyceraldehyde-3-phosphate dehydrogenase gene promoter for recombinant protein expression in Pleurotus ostreatus.

Authors:  Chaomin Yin; Liesheng Zheng; Jihong Zhu; Liguo Chen; Aimin Ma
Journal:  FEMS Microbiol Lett       Date:  2015-01-23       Impact factor: 2.742

4.  Diverse Regulation of the CreA Carbon Catabolite Repressor in Aspergillus nidulans.

Authors:  Laure N A Ries; Sarah R Beattie; Eduardo A Espeso; Robert A Cramer; Gustavo H Goldman
Journal:  Genetics       Date:  2016-03-26       Impact factor: 4.562

5.  Analysis of the promoter region of the gene LIP1 encoding triglyceride lipase from Fusarium graminearum.

Authors:  Jie Feng; Vijai Bhadauria; Guosheng Liu; Gopalan Selvaraj; Geoffrey R Hughes; Yangdou Wei
Journal:  Microbiol Res       Date:  2011-02-03       Impact factor: 5.415

6.  Evaluation of agrobacterium-mediated transformation of Agaricus bisporus using a range of promoters linked to hygromycin resistance.

Authors:  C Burns; K M Leach; T J Elliott; M P Challen; G D Foster; A Bailey
Journal:  Mol Biotechnol       Date:  2006-02       Impact factor: 2.695

Review 7.  Regulation of gene expression via the core promoter and the basal transcriptional machinery.

Authors:  Tamar Juven-Gershon; James T Kadonaga
Journal:  Dev Biol       Date:  2009-08-13       Impact factor: 3.582

8.  A conserved GA element in TATA-less RNA polymerase II promoters.

Authors:  Martin Seizl; Holger Hartmann; Friederike Hoeg; Fabian Kurth; Dietmar E Martin; Johannes Söding; Patrick Cramer
Journal:  PLoS One       Date:  2011-11-16       Impact factor: 3.240

9.  Molecular evolution and functional divergence of tubulin superfamily in the fungal tree of life.

Authors:  Zhongtao Zhao; Huiquan Liu; Yongping Luo; Shanyue Zhou; Lin An; Chenfang Wang; Qiaojun Jin; Mingguo Zhou; Jin-Rong Xu
Journal:  Sci Rep       Date:  2014-10-23       Impact factor: 4.379

10.  Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters.

Authors:  Christopher Sibthorp; Huihai Wu; Gwendolyn Cowley; Prudence W H Wong; Paulius Palaima; Igor Y Morozov; Gareth D Weedall; Mark X Caddick
Journal:  BMC Genomics       Date:  2013-12-03       Impact factor: 3.969

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  1 in total

1.  CRISPR/Cas9 using a transient transformation system in Ceriporiopsis subvermispora.

Authors:  Takehito Nakazawa; Chikako Inoue; Dong Xuan Nguyen; Moriyuki Kawauchi; Masahiro Sakamoto; Yoichi Honda
Journal:  Appl Microbiol Biotechnol       Date:  2022-07-29       Impact factor: 5.560

  1 in total

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