| Literature DB >> 31279523 |
Liwei Weng1, Qingqing Wang1, Sixiang Yu2, Xiaolu Yang2, David R Lynch3, Clementina Mesaros4, Ian A Blair5.
Abstract
Frataxin is the protein that is down-regulated in Friedreich ataxia (FRDA), an autosomal recessive genetic disease caused by an intronic GAA repeat expansion in intron-1 of the FXN gene. The GAA repeats result in epigenetic silencing of the FXN gene and reduced expression of the cytosolic full-length frataxin (1-210) protein. Full length frataxin translocates to the mitochondria, leading to formation of mature frataxin (81-210) formed by cleavage of the mitochondrial targeting sequence at K-80 of the full-length protein. There are currently no approved treatments for FRDA, although experimental approaches involving up-regulation or replacement of mature frataxin protein through numerous approaches are being tested. Many of the pre-clinical studies of these experimental approaches are conducted in mouse and monkey models as well as in human cell lines. Consequently, well-validated antibodies are required for use in western blot analysis to determine whether levels of various forms of frataxin have been increased. Here we examined the specificity of five commercially available anti-frataxin antibodies and determined whether they detect mature frataxin in mouse heart tissue. Four protein standards of monkey, human, and mouse frataxin as well as mouse heart tissue were examined using polyacrylamide gel electrophoresis (PAGE) in combination with western blot analysis. One antibody failed to detect any of the frataxin standards or endogenous frataxin in mouse heart tissue. Three of the antibodies detected a protein in mouse heart tissue that ran slightly faster on PAGE (at 23.4 kDa) to that predicted for full-length frataxin (23.9 kDa). One antibody detected all four frataxin standards as well as endogenous mouse mature frataxin in mouse tissue. Significantly, this antibody, which will be useful for monitoring mature frataxin levels in monkey, human, and mouse tissues, did not detect a protein in mouse heart tissue at 23.4 kDa. Therefore, antibodies detecting the immunoreactive protein at 23.4 kDa could be misleading when testing for the up-regulation of frataxin in animal models.Entities:
Keywords: Frataxin; Friedreich's ataxia; Gene therapy; Mature frataxin; Mitochondrial processing peptidase; Mitochondrial protein
Year: 2019 PMID: 31279523 PMCID: PMC6829029 DOI: 10.1016/j.jim.2019.07.001
Source DB: PubMed Journal: J Immunol Methods ISSN: 0022-1759 Impact factor: 2.303
Fig. 1.Comparison of the sequences of frataxin isoforms from three species. Sequences obtained from Uniprot.
Fig. 2.Western blot images of frataxin standards and mouse tissue samples. (A) Abcam Ab113691. (B) Abcam Ab175402. Lane 1: Monkey mature His-tag-frataxin standard (a, 200 pg; 18.3 kDa); lane 2: Human mature His-tag-frataxin standard (200 pg; 15.3 kDa); lane 3: Mouse mature His-tag-frataxin standard (200 pg; 15.4 kDa); lane 4: Mouse intermediate His-tag-frataxin standard (200 pg, 22.4 kDa); lane 5: Mouse heart homogenate (400 μg); lane 6: Mouse heart homogenate (400 μg) + mouse mature His-tag-frataxin standard (200 pg). b: Expected mobility for mouse mature frataxin (14.3 kDa). c: Expected mobility for mouse full-length frataxin (22.9 kDa).
Fig. 4.Western blot images of frataxin standards and mouse tissue samples blotted with Abcam Ab124680. Lane 1: Monkey mature His-tag-frataxin standard (a; 300 pg; 18.3 kDa); lane 2: Human mature His-tag-frataxin standard (300 pg; 15.4 kDa); lane 3: Mouse mature His-tag-frataxin standard (500 pg; 15.3 kDa); lane 4: Mouse intermediate His-tag-frataxin standard (300 pg, 22.4 kDa); lane 5: Mouse heart homogenate (300 μg); lane 6: Mouse heart homogenate (300 μg) + mouse mature His-tag-frataxin standard (500 pg). b: Expected mobility for mouse mature frataxin (14.3 kDa). c: Expected mobility for mouse full-length frataxin (22.9 kDa).
Fig. 3.Western blot image of frataxin standards and mouse tissue samples. (A) Millipore Sigma MAB1594. (B) LifeSpan Biosciences LS-C197243. Lane 1: Monkey mature His-tag-frataxin standard (a; 500 pg; 18.3 kDa); lane 2: Human mature His-tag-frataxin standard (500 pg; 15.3 kDa); lane 3: Mouse mature His-tag-frataxin standard (500 pg; 15.4 kDa); lane 4: Mouse intermediate His-tag-frataxin standard (500 pg, 22.4 kDa); lane 5: Mouse heart homogenate (200 μg); lane 6: Mouse heart homogenate (200 μg) + mouse mature His-tag-frataxin standard (500 pg). b: Expected mobility for mouse mature frataxin (14.3 kDa). c: Expected mobility for mouse full-length frataxin (22.9 kDa).
Antibody characteristics.
| Figure | Catalog number | His-tag monkey frataxin | His-tag human frataxin | His-tag mouse mature frataxin | His-tag mouse intermediate frataxin | Mouse Tissue | ||
|---|---|---|---|---|---|---|---|---|
| Endog mature frataxin | Immuno-reactive protein (22.4 kDa) | His-tag mouse frataxin | ||||||
|
| Ab113691 | None | Strong | Weak | Strong | None | Strong | None |
|
| Ab175402 | Strong | Strong | Strong | Strong | Strong | None | Strong |
|
| MAB1594 | Weak | Weak | Weak | Strong | Weak | Strong | Weak |
|
| LS-C197243 | Strong | Strong | None | Strong | None | Strong | None |
|
| Ab124680 | None | None | None | Very weak | None | Interference | None |
Information on the antibodies tested.
| Supplier | Catalog number | Species | Clone | Monoclonal/polyclonal | Epitope reported |
|---|---|---|---|---|---|
| Abcam | Ab113691 | Mouse | 17A11 | Monoclonal | Full length protein |
| Abcam | Ab175402 | Rabbit | N/A | Polyclonal | Full length protein |
| Millipore-Sigma | MAB1594 | Mouse | 1G2 | Monoclonal | Full length fused to TrpE |
| LifeSpan Bio | LS-C197243 | Mouse | 1D9 | Monoclonal | Synthetic peptide (aa91–200) with GST tag |
| Abcam | Ab124680 | Rabbit | EPR6107 | Monoclonal | Synthetic peptide (aa 150 - C-terminus) |