Literature DB >> 31279505

Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks.

Noah Olsman1, Ania-Ariadna Baetica2, Fangzhou Xiao3, Yoke Peng Leong4, Richard M Murray5, John C Doyle5.   

Abstract

Feedback regulation is pervasive in biology at both the organismal and cellular level. In this article, we explore the properties of a particular biomolecular feedback mechanism called antithetic integral feedback, which can be implemented using the binding of two molecules. Our work develops an analytic framework for understanding the hard limits, performance tradeoffs, and architectural properties of this simple model of biological feedback control. Using tools from control theory, we show that there are simple parametric relationships that determine both the stability and the performance of these systems in terms of speed, robustness, steady-state error, and leakiness. These findings yield a holistic understanding of the behavior of antithetic integral feedback and contribute to a more general theory of biological control systems.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Antithetic Integral Feedback; Feedback Regulation; Performance Tradeoffs; Synthetic Biology

Year:  2019        PMID: 31279505     DOI: 10.1016/j.cels.2019.06.001

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  11 in total

1.  Stabilization of antithetic control via molecular buffering.

Authors:  Edward J Hancock; Diego A Oyarzún
Journal:  J R Soc Interface       Date:  2022-03-09       Impact factor: 4.118

2.  A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance.

Authors:  Maurice Filo; Sant Kumar; Mustafa Khammash
Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694

Review 3.  A synthetic synthesis to explore animal evolution and development.

Authors:  Mindy Liu Perkins; Lautaro Gandara; Justin Crocker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-05-30       Impact factor: 6.671

Review 4.  Context-aware synthetic biology by controller design: Engineering the mammalian cell.

Authors:  Nika Shakiba; Ross D Jones; Ron Weiss; Domitilla Del Vecchio
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

5.  Theoretical study of the impact of adaptation on cell-fate heterogeneity and fractional killing.

Authors:  Julien Hurbain; Darka Labavić; Quentin Thommen; Benjamin Pfeuty
Journal:  Sci Rep       Date:  2020-10-15       Impact factor: 4.379

6.  Biomolecular mechanisms for signal differentiation.

Authors:  Emmanouil Alexis; Carolin C M Schulte; Luca Cardelli; Antonis Papachristodoulou
Journal:  iScience       Date:  2021-11-17

7.  Restoring circadian gene profiles in clock networks using synthetic feedback control.

Authors:  Mathias Foo; Ozgur E Akman; Declan G Bates
Journal:  NPJ Syst Biol Appl       Date:  2022-02-15

8.  Robust and tunable signal processing in mammalian cells via engineered covalent modification cycles.

Authors:  Ross D Jones; Yili Qian; Katherine Ilia; Benjamin Wang; Michael T Laub; Domitilla Del Vecchio; Ron Weiss
Journal:  Nat Commun       Date:  2022-03-31       Impact factor: 17.694

9.  Dichotomous feedback: a signal sequestration-based feedback mechanism for biocontroller design.

Authors:  Aivar Sootla; Nicolas Delalez; Emmanouil Alexis; Arthur Norman; Harrison Steel; George H Wadhams; Antonis Papachristodoulou
Journal:  J R Soc Interface       Date:  2022-04-20       Impact factor: 4.293

Review 10.  Sensitivity minimization, biological homeostasis and information theory.

Authors:  Debojyoti Biswas; Pablo A Iglesias
Journal:  Biol Cybern       Date:  2021-01-21       Impact factor: 2.086

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