Literature DB >> 31277978

CRISPR-based functional evaluation of schizophrenia risk variants.

Prashanth Rajarajan1, Erin Flaherty1, Schahram Akbarian2, Kristen J Brennand3.   

Abstract

As expanding genetic and genomic studies continue to implicate a growing list of variants contributing risk to neuropsychiatric disease, an important next step is to understand the functional impact and points of convergence of these risk factors. Here, with a focus on schizophrenia, we survey the most recent findings of the rare and common variants underlying genetic risk for schizophrenia. We discuss the ongoing efforts to validate these variants in post-mortem brain tissue, as well as new approaches to combine CRISPR-based genome engineering with patient-specific human induced pluripotent stem cell (hiPSC)-based models, in order to identify putative causal schizophrenia loci that regulate gene expression and cellular function. We consider the current limitations of hiPSC-based approaches as well as the future advances necessary to improve the fidelity of this human model. With the objective of utilizing patient genotype data to improve diagnosis and predict treatment response, the integration of CRISPR-genome engineering and hiPSC-based models represent an important strategy with which to systematically demonstrate the cell-type-specific effects of schizophrenia-associated variants.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  CRISPR; Psychiatric genetics; Schizophrenia; Stem cells

Mesh:

Year:  2019        PMID: 31277978      PMCID: PMC6939156          DOI: 10.1016/j.schres.2019.06.017

Source DB:  PubMed          Journal:  Schizophr Res        ISSN: 0920-9964            Impact factor:   4.939


  109 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-18       Impact factor: 11.205

3.  Increased l1 retrotransposition in the neuronal genome in schizophrenia.

Authors:  Miki Bundo; Manabu Toyoshima; Yohei Okada; Wado Akamatsu; Junko Ueda; Taeko Nemoto-Miyauchi; Fumiko Sunaga; Michihiro Toritsuka; Daisuke Ikawa; Akiyoshi Kakita; Motoichiro Kato; Kiyoto Kasai; Toshifumi Kishimoto; Hiroyuki Nawa; Hideyuki Okano; Takeo Yoshikawa; Tadafumi Kato; Kazuya Iwamoto
Journal:  Neuron       Date:  2014-01-02       Impact factor: 17.173

4.  FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.

Authors:  Melina Claussnitzer; Simon N Dankel; Kyoung-Han Kim; Gerald Quon; Wouter Meuleman; Christine Haugen; Viktoria Glunk; Isabel S Sousa; Jacqueline L Beaudry; Vijitha Puviindran; Nezar A Abdennur; Jannel Liu; Per-Arne Svensson; Yi-Hsiang Hsu; Daniel J Drucker; Gunnar Mellgren; Chi-Chung Hui; Hans Hauner; Manolis Kellis
Journal:  N Engl J Med       Date:  2015-08-19       Impact factor: 91.245

Review 5.  Understanding the genetic liability to schizophrenia through the neuroepigenome.

Authors:  John F Fullard; Tobias B Halene; Claudia Giambartolomei; Vahram Haroutunian; Schahram Akbarian; Panos Roussos
Journal:  Schizophr Res       Date:  2016-01-27       Impact factor: 4.939

6.  MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del.

Authors:  Dejian Zhao; Mingyan Lin; Jian Chen; Erika Pedrosa; Anastasia Hrabovsky; H Matthew Fourcade; Deyou Zheng; Herbert M Lachman
Journal:  PLoS One       Date:  2015-07-14       Impact factor: 3.240

7.  Genetic background drives transcriptional variation in human induced pluripotent stem cells.

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8.  Molecular and functional variation in iPSC-derived sensory neurons.

Authors:  Jeremy Schwartzentruber; Stefanie Foskolou; Helena Kilpinen; Julia Rodrigues; Kaur Alasoo; Andrew J Knights; Minal Patel; Angela Goncalves; Rita Ferreira; Caroline Louise Benn; Anna Wilbrey; Magda Bictash; Emma Impey; Lishuang Cao; Sergio Lainez; Alexandre Julien Loucif; Paul John Whiting; Alex Gutteridge; Daniel J Gaffney
Journal:  Nat Genet       Date:  2017-12-11       Impact factor: 38.330

9.  Common genetic variation drives molecular heterogeneity in human iPSCs.

Authors:  Helena Kilpinen; Angela Goncalves; Andreas Leha; Vackar Afzal; Kaur Alasoo; Sofie Ashford; Sendu Bala; Dalila Bensaddek; Francesco Paolo Casale; Oliver J Culley; Petr Danecek; Adam Faulconbridge; Peter W Harrison; Annie Kathuria; Davis McCarthy; Shane A McCarthy; Ruta Meleckyte; Yasin Memari; Nathalie Moens; Filipa Soares; Alice Mann; Ian Streeter; Chukwuma A Agu; Alex Alderton; Rachel Nelson; Sarah Harper; Minal Patel; Alistair White; Sharad R Patel; Laura Clarke; Reena Halai; Christopher M Kirton; Anja Kolb-Kokocinski; Philip Beales; Ewan Birney; Davide Danovi; Angus I Lamond; Willem H Ouwehand; Ludovic Vallier; Fiona M Watt; Richard Durbin; Oliver Stegle; Daniel J Gaffney
Journal:  Nature       Date:  2017-05-10       Impact factor: 49.962

10.  Generation and assembly of human brain region-specific three-dimensional cultures.

Authors:  Steven A Sloan; Jimena Andersen; Anca M Pașca; Fikri Birey; Sergiu P Pașca
Journal:  Nat Protoc       Date:  2018-09       Impact factor: 13.491

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  2 in total

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2.  Investigation of de novo mutations in a schizophrenia case-parent trio by induced pluripotent stem cell-based in vitro disease modeling: convergence of schizophrenia- and autism-related cellular phenotypes.

Authors:  Edit Hathy; Eszter Szabó; Nóra Varga; Zsuzsa Erdei; Csongor Tordai; Boróka Czehlár; Máté Baradits; Bálint Jezsó; Júlia Koller; László Nagy; Mária Judit Molnár; László Homolya; Zsófia Nemoda; Ágota Apáti; János M Réthelyi
Journal:  Stem Cell Res Ther       Date:  2020-11-27       Impact factor: 6.832

  2 in total

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