| Literature DB >> 31275256 |
Biao Chen1,2,3, Kefu Yu1,2,3, Jiayuan Liang1,2,3, Wen Huang1,2,3, Guanghua Wang1,2,3, Hongfei Su1,2,3, Zhenjun Qin1,2,3, Xueyong Huang1,2,3, Ziliang Pan1,2,3, Wenwen Luo1,2,3, Yanqiu Luo1,2,3, Yinghui Wang1,2,3.
Abstract
Coral reefs are continuing to decline worldwide due to anthropogenic climate change. The study of the molecular diversity and biogeographical patterns of Symbiodiniaceae, is essential to understand the adaptive potential and resilience of coral-algal symbiosis. Next generation sequencing was used to analyze the Symbiodiniaceae rDNA internal transcribed spacer 2 marker genes from 178 reef-building coral samples in eight coral habitats across approximately 13° of latitude in the South China Sea (SCS). A total of three Symbiodiniaceae genera, Cladocopium, Durusdinium, and Gerakladium, as well as 31 dominant Symbiodiniaceae types, were identified. Symbiodiniaceae richness, diversity, and community composition varied according to latitude; intermediate and low latitude coral reefs (IR and LR) have higher Symbiodiniaceae richness and diversity than high latitude coral habitats (HC and HR). A PERMANOVA analysis found significant differences in the Symbiodiniaceae community composition in the SCS (F = 14.75, R 2 = 0.20, p = 0.001 < 0.01). The major dominant Symbiodiniaceae types were C1 in the HC and the HR, C1/Cspc/C50/C15 and D1 in the IR, and C3u and C15 in the LR. Canonical correspondence analysis showed that the relative abundance of different Symbiodiniaceae types is affected by multiple environmental factors. Phylogenetic analysis indicated that the Symbiodiniaceae type Cladocopium, which shared common ancestors, shows similar environmental adaptability. Based on these results, we suggest that coral host species played a relatively small role in the identity of the dominant Symbiodiniaceae type. Therefore, the biogeographical patterns of Symbiodiniaceae may be mainly affected by environmental factors. Our research provides a comprehensive overview of the biogeography of Symbiodiniaceae in the SCS, where coral communities and reefs are widely distributed across different latitude regions and have variable environmental conditions. Our data will provide support for further study of the regional diversification of Symbiodiniaceae and the ecological resilience of the coral-Symbiodiniaceae symbioses.Entities:
Keywords: ITS2-rDNA; South China Sea; Symbiodiniaceae; biogeographical partten; coral reefs; molecular diversity; next generation sequencing
Year: 2019 PMID: 31275256 PMCID: PMC6591375 DOI: 10.3389/fmicb.2019.01278
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1The range of coral reef distribution and sampling areas in the South China Sea (SCS). (A) Annual average SST (2008–2016) in the SCS indicate that which have difference among distinct latitude areas (B) Map of the whole SCS with labeled coral reef area. The sampling sites is marked by star. (C–J) The details of sampling sites in the SCS. The map was constructed using software ArcGIS (ver. 10.1).
Coral samples from the South China Sea (SCS) including sampling regions, climate, coral habitats, coordinates, environmental factors (contain SST, Chl a, PAR, SAL, and KD), coral samples information and collected depth.
| Regions | Climate | sampling coral habitats | Coordinates | Environmental factors | Coral species | The number of samples | sampling dates | Depth | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SST/ °C (SD) | Chl | PAR/ E⋅m-2⋅s-1 (SD) | SAL/ ‰ (SD) | KD/ m-1 (SD) | ||||||||
| High latitude coral communities (HC) | Subtropical | Daya Bay (DY) | E114°33′–114°39′, N22°34′–22°39′ | 24.4 (4.4) | 2.105 (0.65) | 37.126 (8.44) | 32.6 (0.14) | 0.159 (0.05) | 6 | 2015.08 | 2–15 m | |
| 5 | ||||||||||||
| 4 | ||||||||||||
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| 5 | ||||||||||||
| Fangchenggang (FC) | E108°31′_108°33′, N21°56′ _21°58′ | 24 (4.9) | 1.688 (0.68) | 35.952 (9.31) | 30 (0.15) | 0.143 (0.05) | 5 | 2016.08 | 4–12 m | |||
| 6 | ||||||||||||
| High latitude coral reefs (HR) | Weizhou Island (WZ) | E109°04′_109°08′, N21°00′ _21°04′ | 25.5 (4.4) | 2.235 (0.55) | 37.561 (8.61) | 32.4 (0.03) | 0.174 (0.04) | 7 | 2015.08 | 2–15 m | ||
| 6 | ||||||||||||
| 3 | ||||||||||||
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| Leizhou Peninsula (LP) | E109°54′–109°55′, N20°13′–20°18′ | 25.8 (4.1) | 2.75 (0.27) | 38.58 (9.02) | 32.8 (0.05) | 0.201 (0.02) | 3 | 2015.08 | 2–12 m | |||
| 2 | ||||||||||||
| 1 | ||||||||||||
| Intermediate latitude coral reefs (IR) | Tropical | Beijiao (BJ) | E111°28′–111°31′, N17°06′–17°07′ | 27.6 (3.8) | 0.156 (0.09) | 42.553 (7.86) | 33.3 (0.05) | 0.02 (0.01) | 6 | 2015.06 | 5–15 m | |
| 4 | ||||||||||||
| 4 | ||||||||||||
| 4 | ||||||||||||
| 4 | ||||||||||||
| Low latitude coral reefs (LR) | Huangyan Island (HY) | E117°44′–117°50′, N15°06′–15°13′ | 28.8 (1.2) | 0.359 (0.42) | 43.657 (5.45) | 34.1 (0.04) | <0.01 (0.04) | 7 | 2015.05 | 5–15 m | ||
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| 3 | ||||||||||||
| 6 | ||||||||||||
| Sanjiao Reef (SJ) | E115°16′–115°19′, N10°10′–10°13′ | 29 (0.9) | 0.147 (0.11) | 42.654 (5.51) | 33.3 (0.03) | <0.01 (0.01) | 5 | 2016.05 | 5–15 m | |||
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| 7 | ||||||||||||
| Xinyi reef (XY) | E115°54′–115°58′, N9°20′–9°21′ | 29.1 (0.9) | 0.124 (0.05) | 43.93 (4.95) | 33.1 (0.02) | <0.01 (0.01) | 4 | 2016.05 | 5–15 m | |||
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Figure 2Symbiodiniaceae OTU richness and diversity in hosts of five coral species in the South China Sea. (A) The number of OTUs of Symbiodiniaceae in five coral species (Porites lutea, Favia palauensis, Plesiastrea versipora, Motipora efflorescens, and Acropora formosa) from distinct latitude regions. The error bars are mean SD. (B) The Shannon (H’) diversity index values of Symbiodiniaceae in five coral species from different latitude regions. The error bars are mean SD. (C) Venn diagram showing the number of Symbiodiniaceae OTUs were identified in high latitude coral communities (no reef), high latitude coral reefs, intermediate coral reefs and low latitude coral reefs in the South China Sea as well as number of OTUs that were shared between them.
Figure 3Five coral species associated with Symbiodiniaceae ITS2 type-based community composition from the SCS. (A) High latitude coral communities (no reef). (B) High latitude coral reefs. (C) Intermediate latitude coral reefs. (D) Low latitude coral reefs. Those sequences were contained that represented relative abundance > 5% in at least one sample in this community analysis.
Figure 4The OTU-based Symbiodiniaceae genera composition and relative abundance over the five species coral samples in each latitude regions. (A) Stackplot showed Symbiodiniaceae OTU-based genera richness in each regions. (B) Symbiodiniaceae OTU-based community structures at genus level.
Figure 5Relationships between Symbiodiniaceae types and environmental factors. The CCA indicated the relationship among the relative abundance of 31 dominant Symbiodiniaceae types, environmental and sampling areas. The first axis (Coordinate 1) explains 54.9% of the total variation and the second axis (Coordinate 2) explains 21.3% of the total variation.
Figure 6Phylogenetic analysis of the dominant Symbiodiniaceae ITS2 types in the SCS based on Bayesian inference. The light orange areas mean those subclades were positively correlated with SST, SAL, PAR and negative correlated with Chl a and KD; The lilac areas mean those subclades were negatively correlated with SST, SAL, PAR and positively correlated with Chl a and KD.