| Literature DB >> 31271790 |
Amber W Taylor1, Erica D Dawson2, Rebecca H Blair1, James E Johnson1, Amelia H Slinskey1, Andrew W Smolak1, Evan Toth1, Kyle Liikanen1, Robert S Stoughton1, Catherine Smith3, Sarah Talbot3, Kathy L Rowlen1.
Abstract
BACKGROUND: Influenza causes a significant annual disease burden, with characterization of the infecting virus important in clinical and public health settings. Rapid immunoassays are fast but insensitive, whereas real-time RT-PCR is sensitive but susceptible to genetic mutations and often requires multiple serial assays. The FluChip-8G Influenza A+B Assay provides type and subtype/lineage identification of influenza A and B, including non-seasonal A viruses, in a single microarray-based assay with same day turnaround time.Entities:
Keywords: FluChip-8G; Influenza subtyping; Microarray; Multiplex RT-PCR
Mesh:
Year: 2019 PMID: 31271790 PMCID: PMC6779046 DOI: 10.1016/j.jviromet.2019.113686
Source DB: PubMed Journal: J Virol Methods ISSN: 0166-0934 Impact factor: 2.014
FluChip-8G Influenza A+B Assay limit of detection (LOD).
| Strain Tested | Positivity | 95% CI | LOD | |
|---|---|---|---|---|
| #/total | % | |||
| A/New York/01/2009 | 25/25 | 100% | 86.7–100 | 1.4 × 103 |
| A/California/07/2009 | 20/20 | 100% | 83.9–100 | 1.8 × 103 |
| A/Perth/16/2009 | 24/25 | 96% | 80.5–99.3 | 1.4 × 103 |
| A/Victoria/361/2011 | 25/25 | 100% | 83.9–100 | 1.2 × 103 |
| B/Brisbane/60/2008 | 24/25 | 96% | 80.5–99.3 | 5.8 × 102 |
| B/Florida/02/2006 | 20/20 | 100% | 83.9–100 | 1.3 × 103 |
| B/Wisconsin/01/2010 | 25/25 | 100% | 86.7–100 | 6.3 × 102 |
| B/Phuket/3073/2013 | 20/20 | 100% | 83.9–100 | 1.7 × 103 |
| A/New Caledonia/20/1999 (H1N1 pre 2009) | 20/20 | 100% | 83.9–100 | 5.6 × 103 |
| A/Anhui/01/2005 (H5N1) | 20/20 | 100% | 83.9–100 | 3.2 × 103 |
| A/mule duck/Bulgaria/328/2011 (H5N8) | 20/20 | 100% | 83.9–100 | 4.9 × 103 |
| A/ruddy turnstone/New Jersey/AI11-1678/2011 (H7N7) | 20/20 | 100% | 83.9–100 | 1.2 × 103 |
| A/mallard/Alberta/177/2004 (H7N9 | 20/20 | 100% | 83.9–100 | 5.8 × 102 |
| A/mule duck/Bulgaria/237/2011 (H5N2) | 20/20 | 100% | 83.9–100 | 1.5 × 103 |
| A/shorebird/Delaware Bay/127/2003 (H9N2) | 20/20 | 100% | 83.9–100 | 7.7 × 102 |
| A/swine/Illinois/4L013/2015 (H1N1v) | 24/25 | 96% | 80.5–99.3 | 1.8 × 105 |
| A/Indiana/08/2011 (H3N2v) | 19/20 | 95% | 76.4–99.1 | 2.9 × 103 |
| A/blue-winged teal/Iowa/10OS2411/2010 (H3N8) | 20/20 | 100% | 83.9–100 | 8.7 × 102 |
FluChip-8G Influenza A+B Assay detection of 52 additional strains, demonstrating analytical reactivity.
Bacteria and viruses evaluated for potential cross-reactivity with the FluChip-8G Influenza A+B Assay. Strains are listed in parentheses.
| Virus | Concentration tested | Bacterium | Concentration tested | ||
|---|---|---|---|---|---|
| Adenovirus (Adenoid 71) | 8.0 × 106 | TCID50/mL | 3.8 × 109 | cfu/mL | |
| Adenovirus (Type 7A, species B) | 3.0 × 107 | TCID50/mL | 8.0 × 105 | TCID50/mL | |
| Coronavirus (229E) | 2.5 × 105 | TCID50/mL | 2.3 × 106 | cfu/mL | |
| Coronavirus (OC43) | 1.4 × 105 | TCID50/mL | 4.7 × 109 | cfu/mL | |
| Cytomegalovirus (ATCC-2011-8) | 1.2 × 105 | TCID50/mL | 2.7 × 108 | cfu/mL | |
| Enterovirus (HEV-71, MP4) | 8.0 × 105 | TCID50/mL | 1.3 × 108 | cfu/mL | |
| Epstein Barr Virus (P-3) | 2.2 × 108 | TCID50/mL | 9.0 × 109 | cfu/mL | |
| Human parainfluenza (Type 1) | 9.5 × 106 | TCID50/mL | 6.5 × 106 | cfu/mL | |
| Human parainfluenza (Type 2, Greer) | 4.5 × 105 | TCID50/mL | 7.0 × 106 | cfu/mL | |
| Human parainfluenza (Type 3) | 2.5 × 105 | TCID50/mL | 1.0 × 106 | ccu/mL | |
| Measles | 1.3 × 105 | TCID50/mL | 1.0 × 106 | cfu/mL | |
| Human metapneumovirus (IA10-2003) | 1.3 × 105 | TCID50/mL | 1.8 × 108 | cfu/mL | |
| Mumps virus (Isolate 1) | 5.0 × 105 | TCID50/mL | 1.0 × 106 | cfu/mL | |
| Human respiratory syncytial virus (CH93(18)-18) | 1.3 × 105 | TCID50/mL | 1.0 × 106 | cfu/mL | |
| Rhinovirus (Type 1A) | 7.0 × 104 | TCID50/mL | 7.5 × 108 | cfu/mL | |
| 7.5 × 108 | cfu/mL | ||||
| 3.4 × 107 | cfu/mL | ||||
| 8.5 × 106 | cfu/mL | ||||
| 3.8 × 106 | cfu/mL | ||||
Multi-site reproducibility of the FluChip-8 G Influenza A + B Assay.
| Target Group | Site A | Site B | Site C | Combined | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Agreement | Agreement | Agreement | Agreement | ||||||||||
| n/total | % | 95% CI | n/total | % | 95% CI | n/total | % | 95% CI | n/total | % | 95% CI | ||
| A/H1N1pdm09 | 3x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 54/54 | 100% | 93.4 - 100 |
| 1x LOD | 18/18 | 100% | 82.4 - 100 | 14/18 | 78% | 54.8 - 91.0 | 17/18 | 94% | 74.2 - 99.0 | 49/54 | 91% | 80.1 - 96.0 | |
| A/H3N2 | 3x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 54/54 | 100% | 93.4 - 100 |
| 1x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 54/54 | 100% | 93.4 - 100 | |
| B/Yamagata | 3x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 54/54 | 100% | 93.4 - 100 |
| 1x LOD | 18/18 | 100% | 82.4 - 100 | 17/18 | 94% | 74.2 - 99.0 | 18/18 | 100% | 82.4 - 100 | 53/54 | 98% | 90.2 - 99.7 | |
| B/Victoria | 3x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 54/54 | 100% | 93.4 - 100 |
| 1x LOD | 17/18 | 94% | 74.2 - 99.0 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 53/54 | 98% | 90.2 - 99.7 | |
| A/non-seasonal | 3x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 17/18 | 94% | 74.2 - 99.0 | 53/54 | 98% | 90.2 - 99.7 |
| 1x LOD | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 18/18 | 100% | 82.4 - 100 | 54/54 | 100% | 93.4 - 100 | |