Literature DB >> 31269435

Ultra-Sensitive TP53 Sequencing for Cancer Detection Reveals Progressive Clonal Selection in Normal Tissue over a Century of Human Lifespan.

Jesse J Salk1, Kaitlyn Loubet-Senear2, Elisabeth Maritschnegg3, Charles C Valentine4, Lindsey N Williams4, Jacob E Higgins4, Reinhard Horvat5, Adriaan Vanderstichele6, Daniela Nachmanson2, Kathryn T Baker2, Mary J Emond7, Emily Loter8, Maria Tretiakova2, Thierry Soussi9, Lawrence A Loeb2, Robert Zeillinger3, Paul Speiser3, Rosa Ana Risques10.   

Abstract

High-accuracy next-generation DNA sequencing promises a paradigm shift in early cancer detection by enabling the identification of mutant cancer molecules in minimally invasive body fluid samples. We demonstrate 80% sensitivity for ovarian cancer detection using ultra-accurate Duplex Sequencing to identify TP53 mutations in uterine lavage. However, in addition to tumor DNA, we also detect low-frequency TP53 mutations in nearly all lavages from women with and without cancer. These mutations increase with age and share the selection traits of clonal TP53 mutations commonly found in human tumors. We show that low-frequency TP53 mutations exist in multiple healthy tissues, from newborn to centenarian, and progressively increase in abundance and pathogenicity with older age across tissue types. Our results illustrate that subclonal cancer evolutionary processes are a ubiquitous part of normal human aging, and great care must be taken to distinguish tumor-derived from age-associated mutations in high-sensitivity clinical cancer diagnostics.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Duplex Sequencing; TP53, clonal evolution; aging; early detection; gynecologic oncology; high-grade serous ovarian cancer; next-generation sequencing; somatic mutations; uterine lavage

Mesh:

Substances:

Year:  2019        PMID: 31269435      PMCID: PMC6639023          DOI: 10.1016/j.celrep.2019.05.109

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  49 in total

1.  Next-Generation Sequencing of Circulating Tumor DNA for Early Cancer Detection.

Authors:  Alexander M Aravanis; Mark Lee; Richard D Klausner
Journal:  Cell       Date:  2017-02-09       Impact factor: 41.582

2.  Detection of ultra-rare mutations by next-generation sequencing.

Authors:  Michael W Schmitt; Scott R Kennedy; Jesse J Salk; Edward J Fox; Joseph B Hiatt; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-01       Impact factor: 11.205

3.  Ultra-sensitive Sequencing Identifies High Prevalence of Clonal Hematopoiesis-Associated Mutations throughout Adult Life.

Authors:  Rocio Acuna-Hidalgo; Hilal Sengul; Marloes Steehouwer; Maartje van de Vorst; Sita H Vermeulen; Lambertus A L M Kiemeney; Joris A Veltman; Christian Gilissen; Alexander Hoischen
Journal:  Am J Hum Genet       Date:  2017-06-29       Impact factor: 11.025

4.  Genome-wide quantification of rare somatic mutations in normal human tissues using massively parallel sequencing.

Authors:  Margaret L Hoang; Isaac Kinde; Cristian Tomasetti; K Wyatt McMahon; Thomas A Rosenquist; Arthur P Grollman; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

Review 5.  Liquid biopsies: genotyping circulating tumor DNA.

Authors:  Luis A Diaz; Alberto Bardelli
Journal:  J Clin Oncol       Date:  2014-01-21       Impact factor: 44.544

6.  The Yet Unrealized Promise of Ovarian Cancer Screening.

Authors:  Charles W Drescher; Garnet L Anderson
Journal:  JAMA Oncol       Date:  2018-04-01       Impact factor: 31.777

Review 7.  Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations.

Authors:  Jesse J Salk; Michael W Schmitt; Lawrence A Loeb
Journal:  Nat Rev Genet       Date:  2018-03-26       Impact factor: 53.242

8.  Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence.

Authors:  Giulio Genovese; Anna K Kähler; Robert E Handsaker; Johan Lindberg; Samuel A Rose; Samuel F Bakhoum; Kimberly Chambert; Eran Mick; Benjamin M Neale; Menachem Fromer; Shaun M Purcell; Oscar Svantesson; Mikael Landén; Martin Höglund; Sören Lehmann; Stacey B Gabriel; Jennifer L Moran; Eric S Lander; Patrick F Sullivan; Pamela Sklar; Henrik Grönberg; Christina M Hultman; Steven A McCarroll
Journal:  N Engl J Med       Date:  2014-11-26       Impact factor: 91.245

9.  Age-related mutations associated with clonal hematopoietic expansion and malignancies.

Authors:  Mingchao Xie; Charles Lu; Jiayin Wang; Michael D McLellan; Kimberly J Johnson; Michael C Wendl; Joshua F McMichael; Heather K Schmidt; Venkata Yellapantula; Christopher A Miller; Bradley A Ozenberger; John S Welch; Daniel C Link; Matthew J Walter; Elaine R Mardis; John F Dipersio; Feng Chen; Richard K Wilson; Timothy J Ley; Li Ding
Journal:  Nat Med       Date:  2014-10-19       Impact factor: 53.440

10.  Uterine and Tubal Lavage for Earlier Cancer Detection Using an Innovative Catheter: A Feasibility and Safety Study.

Authors:  Elisabeth Maritschnegg; Florian Heitz; Nina Pecha; Jirí Bouda; Fabian Trillsch; Christoph Grimm; Adriaan Vanderstichele; Christiane Agreiter; Philipp Harter; Eva Obermayr; Ignace Vergote; Robert Zeillinger; Paul Speiser
Journal:  Int J Gynecol Cancer       Date:  2018-11       Impact factor: 3.437

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  29 in total

Review 1.  p53: 800 million years of evolution and 40 years of discovery.

Authors:  Arnold J Levine
Journal:  Nat Rev Cancer       Date:  2020-05-13       Impact factor: 60.716

Review 2.  Delineating the evolutionary dynamics of cancer from theory to reality.

Authors:  Ivana Bozic; Catherine J Wu
Journal:  Nat Cancer       Date:  2020-06-22

3.  Characterization of TP53 mutations in Pap test DNA of women with and without serous ovarian carcinoma.

Authors:  Jeffrey D Krimmel-Morrison; Talayeh S Ghezelayagh; Shenyi Lian; Yuezheng Zhang; Jeanne Fredrickson; Daniela Nachmanson; Kathryn T Baker; Marc R Radke; Enna Hun; Barbara M Norquist; Mary J Emond; Elizabeth M Swisher; Rosa Ana Risques
Journal:  Gynecol Oncol       Date:  2019-12-12       Impact factor: 5.482

4.  Single-molecule detection of cancer mutations using a novel PCR-LDR-qPCR assay.

Authors:  Cristian Ruiz; Jianmin Huang; Sarah F Giardina; Philip B Feinberg; Aashiq H Mirza; Manny D Bacolod; Steven A Soper; Francis Barany
Journal:  Hum Mutat       Date:  2020-02-17       Impact factor: 4.878

Review 5.  Cancer-Associated Mutations but No Cancer: Insights into the Early Steps of Carcinogenesis and Implications for Early Cancer Detection.

Authors:  Scott R Kennedy; Yuezheng Zhang; Rosa Ana Risques
Journal:  Trends Cancer       Date:  2019-08-22

6.  Circulating nuclear DNA structural features, origins, and complete size profile revealed by fragmentomics.

Authors:  Cynthia Sanchez; Benoit Roch; Thibault Mazard; Philippe Blache; Zahra Al Amir Dache; Brice Pastor; Ekaterina Pisareva; Rita Tanos; Alain R Thierry
Journal:  JCI Insight       Date:  2021-04-08

7.  Broadening the spectrum of cancer genes under selection in human populations.

Authors:  Konstantinos Voskarides
Journal:  FASEB Bioadv       Date:  2021-03-27

8.  The Key Characteristics of Carcinogens: Relationship to the Hallmarks of Cancer, Relevant Biomarkers, and Assays to Measure Them.

Authors:  Martyn T Smith; Kathryn Z Guyton; Nicole Kleinstreuer; Alexandre Borrel; Andres Cardenas; Weihsueh A Chiu; Dean W Felsher; Catherine F Gibbons; William H Goodson; Keith A Houck; Agnes B Kane; Michele A La Merrill; Herve Lebrec; Leroy Lowe; Cliona M McHale; Sheroy Minocherhomji; Linda Rieswijk; Martha S Sandy; Hideko Sone; Amy Wang; Luoping Zhang; Lauren Zeise; Mark Fielden
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-03-09       Impact factor: 4.254

9.  Methylomic Landscapes of Ovarian Cancer Precursor Lesions.

Authors:  Thomas R Pisanic; Yeh Wang; Hanru Sun; Michael Considine; Lihong Li; Tza-Huei Wang; Tian-Li Wang; Ie-Ming Shih
Journal:  Clin Cancer Res       Date:  2020-08-17       Impact factor: 12.531

Review 10.  Pathogenic postzygotic mosaicism in the tyrosine receptor kinase pathway: potential unidentified human disease hidden away in a few cells.

Authors:  Irene Tiemann-Boege; Theresa Mair; Atena Yasari; Michal Zurovec
Journal:  FEBS J       Date:  2020-09-05       Impact factor: 5.542

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