Literature DB >> 31265268

Enzymatic Pictet-Spengler Reaction: Computational Study of the Mechanism and Enantioselectivity of Norcoclaurine Synthase.

Xiang Sheng1, Fahmi Himo1.   

Abstract

The Pictet-Spengler (PS) reaction, i.e., the acid-catalyzed condensation between β-arylethylamine and an aldehyde or a ketone and the subsequent ring closure, is an important reaction in organic chemistry. A number of enzymes (called Pictet-Spenglerases, PSases) have been identified to catalyze this reaction, usually with very high enantioselectivity, making these enzymes of potential value in biocatalysis. PSases catalyze the key step in the biosynthesis of indole and benzylisoquinoline alkaloids of plant origin, some of which have pharmacological importance. However, the reaction mechanisms and the origins of the selectivity are not fully understood. Herein, we report a quantum chemical investigation of the mechanism and enantioselectivity of norcoclaurine synthase (NCS), an enzyme that catalyzes the PS condensation between dopamine and 4-hydroxyphenylacetaldehyde (4-HPAA). A large model of the active site is designed on the basis of a recent crystal structure, and it is used to calculate the detailed energy profile of the reaction. Good agreement is obtained between the calculated energies and available experimental information. Both the "dopamine-first" and the "HPAA-first" binding modes of the substrates reported in the literature are shown to be energetically accessible in the enzyme-substrate complex. However, it is demonstrated that only the dopamine-first pathway is associated with feasible energy barriers. Key active site residues are identified, and their roles in the catalysis are discussed and compared to site-directed mutagenesis experiments. Very importantly, the calculations are able to reproduce and rationalize the observed enantioselectivity of NCS. A detailed analysis of the geometries of the intermediates and transition states helps to pinpoint the main factors controlling the selectivity.

Entities:  

Year:  2019        PMID: 31265268     DOI: 10.1021/jacs.9b04591

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Isolation and characterization of two O-methyltransferases involved in benzylisoquinoline alkaloid biosynthesis in sacred lotus (Nelumbo nucifera).

Authors:  Ivette M Menéndez-Perdomo; Peter J Facchini
Journal:  J Biol Chem       Date:  2019-12-30       Impact factor: 5.157

Review 2.  The role of biocatalysis in the asymmetric synthesis of alkaloids - an update.

Authors:  Emmanuel Cigan; Bettina Eggbauer; Joerg H Schrittwieser; Wolfgang Kroutil
Journal:  RSC Adv       Date:  2021-08-20       Impact factor: 3.361

3.  Application of Liquid Chromatography Coupled to Mass Spectrometry in Quality Assessment of Dietary Supplements-A Case Study of Tryptophan Supplements: Release Assay, Targeted and Untargeted Studies.

Authors:  Krzysztof Adam Stępień; Joanna Giebułtowicz
Journal:  Pharmaceuticals (Basel)       Date:  2022-04-04

4.  Computational Study of Mechanism and Enantioselectivity of Imine Reductase from Amycolatopsis orientalis.

Authors:  Mario Prejanò; Xiang Sheng; Fahmi Himo
Journal:  ChemistryOpen       Date:  2021-11-25       Impact factor: 2.630

Review 5.  Environmental and Genetic Factors Involved in Plant Protection-Associated Secondary Metabolite Biosynthesis Pathways.

Authors:  Xiaori Zhan; Zhehao Chen; Rong Chen; Chenjia Shen
Journal:  Front Plant Sci       Date:  2022-04-08       Impact factor: 6.627

6.  A Catalytic Asymmetric Pictet-Spengler Platform as a Biomimetic Diversification Strategy toward Naturally Occurring Alkaloids.

Authors:  Manuel J Scharf; Benjamin List
Journal:  J Am Chem Soc       Date:  2022-08-17       Impact factor: 16.383

Review 7.  Recent trends in biocatalysis.

Authors:  Dong Yi; Thomas Bayer; Christoffel P S Badenhorst; Shuke Wu; Mark Doerr; Matthias Höhne; Uwe T Bornscheuer
Journal:  Chem Soc Rev       Date:  2021-06-18       Impact factor: 60.615

  7 in total

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