Literature DB >> 31257869

A Nucleic Acid Nanostructure Built through On-Electrode Ligation for Electrochemical Detection of a Broad Range of Analytes.

Subramaniam Somasundaram1, Christopher J Easley1.   

Abstract

For an assay to be most effective in point-of-care clinical analysis, it needs to be economical, simple, generalizable, and free from tedious workflows. While electrochemistry-based DNA sensors reduce instrumental costs and eliminate complicated procedures, there remains a need to address probe costs and generalizability, as numerous probes with multiple conjugations are needed to quantify a wide range of biomarkers. In this work, we have opened a route to circumvent complicated multiconjugation schemes using enzyme-catalyzed probe construction directly on the surface of the electrode. With this, we have created a versatile DNA nanostructure probe and validated its effectiveness by quantification of proteins (streptavidin, anti-digoxigenin, anti-tacrolimus) and small molecules (biotin, digoxigenin, tacrolimus) using the same platform. Tacrolimus, a widely prescribed immunosuppressant drug for organ transplant patients, was directly quantified with electrochemistry for the first time, with the assay range matching the therapeutic index range. Finally, the stability and sensitivity of the probe was confirmed in a background of minimally diluted human serum.

Entities:  

Year:  2019        PMID: 31257869      PMCID: PMC6800171          DOI: 10.1021/jacs.9b06229

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  International Federation of Clinical Chemistry/International Association of Therapeutic Drug Monitoring and Clinical Toxicology working group on immunosuppressive drug monitoring.

Authors:  David W Holt; Victor W Armstrong; Andrea Griesmacher; Raymond G Morris; Kimberly L Napoli; Leslie M Shaw
Journal:  Ther Drug Monit       Date:  2002-02       Impact factor: 3.681

2.  A Highly Selective Electrochemical DNA-Based Sensor That Employs Steric Hindrance Effects to Detect Proteins Directly in Whole Blood.

Authors:  Sahar Sadat Mahshid; Sébastien Camiré; Francesco Ricci; Alexis Vallée-Bélisle
Journal:  J Am Chem Soc       Date:  2015-09-24       Impact factor: 15.419

3.  Effects of probe length, probe geometry, and redox-tag placement on the performance of the electrochemical E-DNA sensor.

Authors:  Arica A Lubin; Brook Vander Stoep Hunt; Ryan J White; Kevin W Plaxco
Journal:  Anal Chem       Date:  2009-03-15       Impact factor: 6.986

4.  Random walk on a leash: a simple single-molecule diffusion model for surface-tethered redox molecules with flexible linkers.

Authors:  Kuan-Chun Huang; Ryan J White
Journal:  J Am Chem Soc       Date:  2013-08-20       Impact factor: 15.419

Review 5.  Biosensors: sense and sensibility.

Authors:  Anthony P F Turner
Journal:  Chem Soc Rev       Date:  2013-02-19       Impact factor: 54.564

6.  Biomolecular Steric Hindrance Effects Are Enhanced on Nanostructured Microelectrodes.

Authors:  Sahar Sadat Mahshid; Alexis Vallée-Bélisle; Shana O Kelley
Journal:  Anal Chem       Date:  2017-09-05       Impact factor: 6.986

7.  Electrochemical DNA-Based Immunoassay That Employs Steric Hindrance To Detect Small Molecules Directly in Whole Blood.

Authors:  Sahar S Mahshid; Francesco Ricci; Shana O Kelley; Alexis Vallée-Bélisle
Journal:  ACS Sens       Date:  2017-05-25       Impact factor: 7.711

8.  Detection of IP-10 protein marker in undiluted blood serum via an electrochemical E-DNA scaffold sensor.

Authors:  Andrew J Bonham; Nicole G Paden; Francesco Ricci; Kevin W Plaxco
Journal:  Analyst       Date:  2013-10-07       Impact factor: 4.616

9.  Real-time, aptamer-based tracking of circulating therapeutic agents in living animals.

Authors:  Brian Scott Ferguson; David A Hoggarth; Dan Maliniak; Kyle Ploense; Ryan J White; Nick Woodward; Kuangwen Hsieh; Andrew J Bonham; Michael Eisenstein; Tod E Kippin; Kevin W Plaxco; Hyongsok Tom Soh
Journal:  Sci Transl Med       Date:  2013-11-27       Impact factor: 17.956

10.  A reusable electrochemical proximity assay for highly selective, real-time protein quantitation in biological matrices.

Authors:  Jiaming Hu; Yajiao Yu; Jessica C Brooks; Leah A Godwin; Subramaniam Somasundaram; Ferdous Torabinejad; Joonyul Kim; Curtis Shannon; Christopher J Easley
Journal:  J Am Chem Soc       Date:  2014-05-30       Impact factor: 15.419

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  8 in total

1.  Reagentless biomolecular analysis using a molecular pendulum.

Authors:  Jagotamoy Das; Surath Gomis; Jenise B Chen; Hanie Yousefi; Sharif Ahmed; Alam Mahmud; Wendi Zhou; Edward H Sargent; Shana O Kelley
Journal:  Nat Chem       Date:  2021-03-08       Impact factor: 24.427

2.  Functional DNA Regulated CRISPR-Cas12a Sensors for Point-of-Care Diagnostics of Non-Nucleic-Acid Targets.

Authors:  Ying Xiong; Jingjing Zhang; Zhenglin Yang; Quanbing Mou; Yuan Ma; Yonghua Xiong; Yi Lu
Journal:  J Am Chem Soc       Date:  2019-12-23       Impact factor: 15.419

3.  Electrochemical Sensing of the Peptide Drug Exendin-4 Using a Versatile Nucleic Acid Nanostructure.

Authors:  Niamat Khuda; Subramaniam Somasundaram; Christopher J Easley
Journal:  ACS Sens       Date:  2022-02-18       Impact factor: 7.711

4.  Nonfaradaic Current Suppression in DNA-Based Electrochemical Assays with a Differential Potentiostat.

Authors:  Mark D Holtan; Subramaniam Somasundaram; Niamat Khuda; Christopher J Easley
Journal:  Anal Chem       Date:  2019-12-03       Impact factor: 6.986

5.  Orthogonal Control of DNA Nanoswitches with Mixed Physical and Biochemical Cues.

Authors:  Nathan T Forrest; Javier Vilcapoma; Kristina Alejos; Ken Halvorsen; Arun Richard Chandrasekaran
Journal:  Biochemistry       Date:  2021-01-19       Impact factor: 3.162

Review 6.  Nucleic-Acid Driven Cooperative Bioassays Using Probe Proximity or Split-Probe Techniques.

Authors:  Andresa B Bezerra; Amanda S N Kurian; Christopher J Easley
Journal:  Anal Chem       Date:  2020-11-04       Impact factor: 6.986

7.  A DNA Electrochemical Sensor via Terminal Protection of Small-Molecule-Linked DNA for Highly Sensitive Protein Detection.

Authors:  Ping Ouyang; Chenxin Fang; Jialun Han; Jingjing Zhang; Yuxing Yang; Yang Qing; Yubing Chen; Wenyan Shang; Jie Du
Journal:  Biosensors (Basel)       Date:  2021-11-13

8.  Accelerated Electron Transfer in Nanostructured Electrodes Improves the Sensitivity of Electrochemical Biosensors.

Authors:  Kaiyu Fu; Ji-Won Seo; Vladimir Kesler; Nicolo Maganzini; Brandon D Wilson; Michael Eisenstein; Boris Murmann; H Tom Soh
Journal:  Adv Sci (Weinh)       Date:  2021-10-19       Impact factor: 16.806

  8 in total

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