Literature DB >> 31255074

Machine learning for potential energy surfaces: An extensive database and assessment of methods.

Gunnar Schmitz1, Ian Heide Godtliebsen1, Ove Christiansen1.   

Abstract

On the basis of a new extensive database constructed for the purpose, we assess various Machine Learning (ML) algorithms to predict energies in the framework of potential energy surface (PES) construction and discuss black box character, robustness, and efficiency. The database for training ML algorithms in energy predictions based on the molecular structure contains SCF, RI-MP2, RI-MP2-F12, and CCSD(F12*)(T) data for around 10.5 × 106 configurations of 15 small molecules. The electronic energies as function of molecular structure are computed from both static and iteratively refined grids in the context of automized PES construction for anharmonic vibrational computations within the n-mode expansion. We explore the performance of a range of algorithms including Gaussian Process Regression (GPR), Kernel Ridge Regression, Support Vector Regression, and Neural Networks (NNs). We also explore methods related to GPR such as sparse Gaussian Process Regression, Gaussian process Markov Chains, and Sparse Gaussian Process Markov Chains. For NNs, we report some explorations of architecture, activation functions, and numerical settings. Different delta-learning strategies are considered, and the use of delta learning targeting CCSD(F12*)(T) predictions using, for example, RI-MP2 combined with machine learned CCSD(F12*)(T)-RI-MP2 differences is found to be an attractive option.

Entities:  

Year:  2019        PMID: 31255074     DOI: 10.1063/1.5100141

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Gaussian Process Regression for Materials and Molecules.

Authors:  Volker L Deringer; Albert P Bartók; Noam Bernstein; David M Wilkins; Michele Ceriotti; Gábor Csányi
Journal:  Chem Rev       Date:  2021-08-16       Impact factor: 60.622

2.  Theoretical studies on triplet-state driven dissociation of formaldehyde by quasi-classical molecular dynamics simulation on machine-learning potential energy surface.

Authors:  Shichen Lin; Daoling Peng; Weitao Yang; Feng Long Gu; Zhenggang Lan
Journal:  J Chem Phys       Date:  2021-12-07       Impact factor: 3.488

3.  Efficient Amino Acid Conformer Search with Bayesian Optimization.

Authors:  Lincan Fang; Esko Makkonen; Milica Todorović; Patrick Rinke; Xi Chen
Journal:  J Chem Theory Comput       Date:  2021-02-12       Impact factor: 6.006

4.  Molecular Conformer Search with Low-Energy Latent Space.

Authors:  Xiaomi Guo; Lincan Fang; Yong Xu; Wenhui Duan; Patrick Rinke; Milica Todorović; Xi Chen
Journal:  J Chem Theory Comput       Date:  2022-06-13       Impact factor: 6.578

5.  On the synergy of matrix-isolation infrared spectroscopy and vibrational configuration interaction computations.

Authors:  Dennis F Dinu; Maren Podewitz; Hinrich Grothe; Thomas Loerting; Klaus R Liedl
Journal:  Theor Chem Acc       Date:  2020-11-09       Impact factor: 1.702

  5 in total

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