Literature DB >> 3125329

Very slightly deleterious mutations and the molecular clock.

T Ohta1.   

Abstract

The model of very slightly deleterious mutations was examined from the standpoint of population genetics in relation to the molecular evolutionary clock. The distribution of selection coefficients of mutants (in terms of amino acid changes) with small effect is thought to be continuous around zero, with an average negative value. The variance of selection coefficients depends upon environmental diversity and hence on total population size of a species. By considering various examples of amino acid substitutions, the average and standard error of selection coefficients and the reciprocal of population size are assumed to have similar values. The model predicts negative correlation between evolutionary rate and population size. This effect is expected to be partially cancelled with the generation time effect of intrinsic mutation rate. Implications of this prediction on the molecular evolutionary clock are discussed.

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Year:  1987        PMID: 3125329     DOI: 10.1007/bf02111276

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

1.  Model of effectively neutral mutations in which selective constraint is incorporated.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

Review 2.  Mutational pressure as the main cause of molecular evolution and polymorphism.

Authors:  T Ota
Journal:  Nature       Date:  1974-11-29       Impact factor: 49.962

3.  On the constancy of the evolutionary rate of cistrons.

Authors:  T Ota; M Kimura
Journal:  J Mol Evol       Date:  1971       Impact factor: 2.395

4.  Evolutionary clock: nonconstancy of rate in different species.

Authors:  T H Jukes; R Holmquist
Journal:  Science       Date:  1972-08-11       Impact factor: 47.728

5.  Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles.

Authors:  M Kimura
Journal:  Genet Res       Date:  1968-06       Impact factor: 1.588

6.  Isolation and nucleotide sequence analysis of the beta-type globin pseudogene from human, gorilla and chimpanzee.

Authors:  L Y Chang; J L Slightom
Journal:  J Mol Biol       Date:  1984-12-25       Impact factor: 5.469

7.  The eta-globin gene. Its long evolutionary history in the beta-globin gene family of mammals.

Authors:  M Goodman; B F Koop; J Czelusniak; M L Weiss
Journal:  J Mol Biol       Date:  1984-12-25       Impact factor: 5.469

Review 8.  Evolution of higher-organism DNA.

Authors:  D E Kohne
Journal:  Q Rev Biophys       Date:  1970-08       Impact factor: 5.318

9.  The molecular clock may be an episodic clock.

Authors:  J H Gillespie
Journal:  Proc Natl Acad Sci U S A       Date:  1984-12       Impact factor: 11.205

10.  Functional effects of PGI allozymes in Escherichia coli.

Authors:  D E Dykhuizen; D L Hartl
Journal:  Genetics       Date:  1983-09       Impact factor: 4.562

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  27 in total

1.  Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans.

Authors:  Josep M Comeron
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

2.  Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants.

Authors:  B S Gaut; S V Muse; W D Clark; M T Clegg
Journal:  J Mol Evol       Date:  1992-10       Impact factor: 2.395

3.  On the dependence of speciation rates on species abundance and characteristic population size.

Authors:  Anastassia M Makarieva; Victor G Gorshkov
Journal:  J Biosci       Date:  2004-03       Impact factor: 1.826

Review 4.  Molecular clocks and explosive radiations.

Authors:  Lindell Bromham
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

5.  Theoretical study of near neutrality. I. Heterozygosity and rate of mutant substitution.

Authors:  T Ohta; H Tachida
Journal:  Genetics       Date:  1990-09       Impact factor: 4.562

6.  The nearly neutral and selection theories of molecular evolution under the fisher geometrical framework: substitution rate, population size, and complexity.

Authors:  Pablo Razeto-Barry; Javier Díaz; Rodrigo A Vásquez
Journal:  Genetics       Date:  2012-03-16       Impact factor: 4.562

7.  Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee.

Authors:  Jian Lu; Chung-I Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-23       Impact factor: 11.205

8.  Molecular clock: an anti-neo-Darwinian legacy.

Authors:  Naoyuki Takahata
Journal:  Genetics       Date:  2007-05       Impact factor: 4.562

9.  Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont.

Authors:  Satoshi Nakagawa; Shigeru Shimamura; Yoshihiro Takaki; Yohey Suzuki; Shun-ichi Murakami; Tamaki Watanabe; So Fujiyoshi; Sayaka Mino; Tomoo Sawabe; Takahiro Maeda; Hiroko Makita; Suguru Nemoto; Shin-Ichiro Nishimura; Hiromi Watanabe; Tomo-o Watsuji; Ken Takai
Journal:  ISME J       Date:  2013-08-08       Impact factor: 10.302

10.  Deep resequencing reveals excess rare recent variants consistent with explosive population growth.

Authors:  Alex Coventry; Lara M Bull-Otterson; Xiaoming Liu; Andrew G Clark; Taylor J Maxwell; Jacy Crosby; James E Hixson; Thomas J Rea; Donna M Muzny; Lora R Lewis; David A Wheeler; Aniko Sabo; Christine Lusk; Kenneth G Weiss; Humeira Akbar; Andrew Cree; Alicia C Hawes; Irene Newsham; Robin T Varghese; Donna Villasana; Shannon Gross; Vandita Joshi; Jireh Santibanez; Margaret Morgan; Kyle Chang; Walker Hale Iv; Alan R Templeton; Eric Boerwinkle; Richard Gibbs; Charles F Sing
Journal:  Nat Commun       Date:  2010-11-30       Impact factor: 14.919

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