| Literature DB >> 31251754 |
Ruksana Raihan1, Sheikh Mohammad Fazle Akbar2, Mamun Al Mahtab3, Kazuaki Takahashi4, Junya Masumoto2, Shahina Tabassum5, Kok Keng Tee6,7, Rosmawati Binti Mohamed1.
Abstract
The direct cytopathic effects of the hepatitis B virus (HBV) on subsequent liver damage are not fully understood in HBV-infected patients. However, associations between the prevalence of various HBV genotypes and the extent of liver damage have been reported from different parts of the world. The purpose of this study was to determine the distribution of HBV genotypes in patients with chronic HBV infection in Bangladesh, a country of 160 million people, of which approximately 3-6 million are chronically infected HBV patients. In addition, whole and partial genome sequencing of HBV was performed to evaluate the relationship between HBV mutations and genotypes. We found that 42% of the patients with low HBV DNA and normal levels of alanine aminotransferase (ALT) had HBV genotype D. In contrast, the HBV genotype C was dominant among patients with high HBV DNA levels (>2000 IU/ml) and elevated ALT and in patients with liver cirrhosis (LC) and hepatocellular carcinomas (HCC). Whole and partial genome sequences of HBV revealed that most patients with LC and HCC had HBV genotype C with mutations at the T1762/A1764 positions. It seems that Bangladesh represents a borderline country, situated within East Asia, which mainly consists of individuals with HBV genotypes B and C, whereas in the western parts of Asia, HBV genotypes A and D are prevalent. Bangladesh is, therefore, an excellent model for the comparison of the pathophysiology of three major HBV genotypes in a single population. The findings of this study suggest a possible association between HBV viral factors and the extent of liver damage in chronic HBV-infected patients.Entities:
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Year: 2019 PMID: 31251754 PMCID: PMC6599139 DOI: 10.1371/journal.pone.0218744
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Grouping of patients with chronic HBV infection.
| Parameters | Group 1 (n = 48) | Group 2 (n = 74) | Group 3 (n = 73) |
|---|---|---|---|
| 28.1 ± 8.5 | 27.4 ± 9.5 | 44.3 ± 14.58 | |
| 38:10 | 66:8 | 68:5 | |
| 802 ± 623 | 2.2×1010 ± 1.1×1010 | 1.6×1010 ± 1.1 x 1012 | |
| 30 ± 7 (16–40) | 65 ± 39 (43–340) | 81 ± 61 (23–315) | |
| 4:44 | 27:47 | 15:58 |
ULN: Upper limit of normal; ALT: Alanine aminotransferase; ULN of ALT: 42 IU/L; The values are shown as mean ± standard deviation, except HBV DNA which has been shown as median with range
The primers used to determine HBV genotypes and for full genome of sequencing of HBV.
| 1st-Sense | X1-1a: | |||
| X1-1b: | ||||
| X1-1c: | ||||
| 1st-Anti-Sense | X1-2: | |||
| X1-2b: | ||||
| 2nd-Sense | X2-1a: | |||
| X2-1b: | ||||
| X2-1c: | ||||
| 2nd-Anti-sense | X27: | |||
| Fragment A | WA-L | 1862–1885 | Sense | |
| WA-R | 1806–1829 | Antisense | ||
| FA2R | 217–240 | Antisense | ||
| FA4L | 801–820 | Sense | ||
| FA4LAS | 801–820 | Antisense | ||
| FA3L | 107–124 | Sense | ||
| WA-2R | 1781–1802 | Antisense | ||
| WA-2L | 1887–1908 | Sense | ||
| PAAS | 455–474 | Antisense | ||
| B260 | 260–279 | Antisense | ||
| B1260 | 1260–1279 | Sense | ||
| B2466 | 2466–2485 | Antisense | ||
| B2830 | 2830–2849 | Antisense | ||
| Fragment B | S1 | 1414–1434 | Sense | |
| S2 | 1436–1456 | Sense | ||
| S3 | 1489–1508 | Sense | ||
| S4 | 1527–1547 | Sense | ||
| AS1 | 2130–2110 | Antisense | ||
| AS2 | 2160–2140 | Antisense | ||
| AS3 | 2185–2165 | Antisense | ||
| AS4 | 2098–2078 | Antisense | ||
HBV genotype distribution among three groups of chronically infected HBV patients.
| Diagnosis | Genotype A | Genotype C | Genotype D |
|---|---|---|---|
| Group 1 (n = 48) | 16 (33.3%) | 12 (25%) | 20 (41.7%) |
| (HBV DNA<2000 IU/ml, ALT<ULN) | |||
| Group 2 (n = 74) | 7 (9.4%) | 45 (60.8%) | 22 (29.7%) |
| (HBV DNA>2000 IU/ml, ALT>ULN) | |||
| Group 3 (n = 73) | 6 (8.2%) | 52 (71.2%) | 15 (20.5%) |
| Liver Cirrhosis and Hepatocellular Carcinoma |
*p<0.001, compared to Group-2 and Group-3 (Fisher Exact Test)
**p<0.001, compared to Group-1 (Fisher Exact Test)
Fig 1Phylogenetic tree constructed with 38 full genome sequences of hepatitis B virus from Bangladesh.
The sequences of Bangladeshi isolates are shown in the phylogenetic tree indicated by black diamond markings. The countries that have close association with Bangladeshi HBV isolates are also indicated with an arrow and the name of the country.
Fig 2Mutations at 1762 and 1764 of Bangladeshi isolates.
Full genome sequences were created in 38 HBV isolates from 38 patients with chronic HBV infection. At the top, the sequence of adrHPBADRA has been shown. B-061-Ban to B-H10-Ban (38 isolates) indicate the identification number of Bangladeshi isolates. The genotypes are shown as gA, gC, and gD on the right side of the identification number. The diagnosis of each isolate has been shown as: Chronic hepatitis (CH) with low HBV DNA (<2000 IU/ml) and normal ALT (Group-1); CH with high HBV DNA (>2000 IU/ml) and elevated ALT (>upper limit of normal) (Group-2); LC, cirrhosis of liver and HCC, hepatocellular carcinoma (Group-3). Also, G1895 mutation was found in 10 patients in our cohort (S1 Fig).
Prevalence of T1762/A1764 mutations in various forms of liver disease.
| Group | Prevalence of genotype | Mutations at T1762/A1764 | Total | |
|---|---|---|---|---|
| Group 1 (n = 3) | A | 1 (33.3%) | 0 | 0% |
| D | 2 (66.7%) | 0 | ||
| Group 2 (n = 15) | A | 6 (40%) | 3 (20%) | 9 (60%) |
| C | 3 (20%) | 3 (20%) | ||
| D | 6 (40%) | 3 (20%) | ||
| Group 3 (n = 20) | A | 4 (20%) | 2 (10%) | 18 (90%) |
| C | 13 (65%) | 13 (65%) | ||
| D | 3 (15%) | 3 (15%) | ||
| Total N = 38 | 27 (71.05%) | |||
Association between HBV genotype C and increased prevalence of mutations at T1762/A1764.
| Group | Mutations at T1762/A1764 |
|---|---|
| Group 1 (n = 6) | 1 (16%) |
| Group 2 (n = 36) | 8 (22.2%) |
| Group 3 (n = 31) | 29 (93.5%) |