| Literature DB >> 31249565 |
Sarah M Beno1, Renato H Orsi1, Rachel A Cheng1, David J Kent1, Jasna Kovac1,2, Diana R Duncan3, Nicole H Martin1, Martin Wiedmann1.
Abstract
[This corrects the article DOI: 10.3389/fmicb.2019.00662.].Entities:
Keywords: Bacillus cereus; psychrotolerant; skim milk broth; spoilage; whole genome sequencing
Year: 2019 PMID: 31249565 PMCID: PMC6582776 DOI: 10.3389/fmicb.2019.01323
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 3Phylogenetic tree constructed from the core SNPs identified in the genomes of 23 B. cereus isolates. The maximum likelihood tree was constructed using a general time-reversible (GTR) model with gamma-distributed sites and 1,000 bootstrap repetitions. Roman numerals in parentheses represent the phylogenetic clade of the isolate, as defined previously (Kovac et al., 2016). QTC clusters representing isolates with similar growth patterns in BHI and SMB at 6°C (see Figure 3A) are mapped onto the phylogenetic tree. Isolates shown in red represent QTC cluster 1 isolates (non-psychrotolerant in BHI broth or SMB). Isolates shown in green represent QTC cluster 2 isolates (psychrotolerant in BHI broth but not SMB), and isolates shown in blue represent clade 3 isolates (psychrotolerant in both BHI broth and SMB). One isolate (FSL M7-0109) did not cluster with other isolates, and is therefore shown in black font. Numbers at branch points represent bootstrap values; only bootstrap values >70 are shown.