Literature DB >> 31244227

Liquid-Cell Electron Tomography of Biological Systems.

William J Dearnaley1,2,3,4, Beatrice Schleupner4, A Cameron Varano1,2,3,4, Nick A Alden1,4, Floricel Gonzalez5, Michael A Casasanta1,2,3, Birgit E Scharf5, Madeline J Dukes6, Deborah F Kelly1,2,3,4.   

Abstract

Liquid-cell electron microscopy is a rapidly growing field in the imaging domain. While real-time observations are readily available to analyze materials and biological systems, these measurementshave been limited to the two-dimensional (2-D) image plane. Here, we introduce an exciting technical advance to image materials in 3-D while enclosed in liquid. The development of liquid-cell electron tomography permitted us to observe and quantify host-pathogen interactions in solution while contained in the vacuum system of the electron microscope. In doing so, we demonstrate new insights for the rules of engagement involving a unique bacteriophage and its host bacterium. A deeper analysis of the genetic content of the phage pathogens revealed structural features of the infectious units while introducing a new paradigm for host interactions. Overall, we demonstrate a technological opportunity to elevate research efforts for in situ imaging while providing a new level of dimensionality beyond the current state of the field.

Entities:  

Keywords:  Liquid-cell; bacteriophage; electron tomography; silicon nitride

Mesh:

Substances:

Year:  2019        PMID: 31244227      PMCID: PMC6786937          DOI: 10.1021/acs.nanolett.9b01309

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  35 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  High-resolution EM of colloidal nanocrystal growth using graphene liquid cells.

Authors:  Jong Min Yuk; Jungwon Park; Peter Ercius; Kwanpyo Kim; Daniel J Hellebusch; Michael F Crommie; Jeong Yong Lee; A Zettl; A Paul Alivisatos
Journal:  Science       Date:  2012-04-06       Impact factor: 47.728

Review 3.  Electron cryotomography.

Authors:  Elitza I Tocheva; Zhuo Li; Grant J Jensen
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

4.  In situ TEM of biological assemblies in liquid.

Authors:  Madeline J Dukes; Brian L Gilmore; Justin R Tanner; Sarah M McDonald; Deborah F Kelly
Journal:  J Vis Exp       Date:  2013-12-30       Impact factor: 1.355

5.  Visualization of the type III secretion sorting platform of Shigella flexneri.

Authors:  Bo Hu; Dustin R Morado; William Margolin; John R Rohde; Olivia Arizmendi; Wendy L Picking; William D Picking; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-12       Impact factor: 11.205

6.  Cryo-electron microscopy of viruses.

Authors:  M Adrian; J Dubochet; J Lepault; A W McDowall
Journal:  Nature       Date:  1984 Mar 1-7       Impact factor: 49.962

7.  Visualizing virus particle mobility in liquid at the nanoscale.

Authors:  A Cameron Varano; Amina Rahimi; Madeline J Dukes; Steven Poelzing; Sarah M McDonald; Deborah F Kelly
Journal:  Chem Commun (Camb)       Date:  2015-11-21       Impact factor: 6.222

8.  Structural remodeling of bacteriophage T4 and host membranes during infection initiation.

Authors:  Bo Hu; William Margolin; Ian J Molineux; Jun Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

9.  Protein secondary structure determination by constrained single-particle cryo-electron tomography.

Authors:  Alberto Bartesaghi; Federico Lecumberry; Guillermo Sapiro; Sriram Subramaniam
Journal:  Structure       Date:  2012-12-05       Impact factor: 5.006

10.  Live Bacterial Physiology Visualized with 5 nm Resolution Using Scanning Transmission Electron Microscopy.

Authors:  Eamonn Kennedy; Edward M Nelson; Tetsuya Tanaka; John Damiano; Gregory Timp
Journal:  ACS Nano       Date:  2016-02-02       Impact factor: 15.881

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  4 in total

Review 1.  Flagellotropic Bacteriophages: Opportunities and Challenges for Antimicrobial Applications.

Authors:  Nathaniel C Esteves; Birgit E Scharf
Journal:  Int J Mol Sci       Date:  2022-06-25       Impact factor: 6.208

2.  Intermediate states of molecular self-assembly from liquid-cell electron microscopy.

Authors:  Huan Wang; Bo Li; Ye-Jin Kim; Oh-Hoon Kwon; Steve Granick
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-07       Impact factor: 11.205

3.  Radiolysis-Driven Evolution of Gold Nanostructures - Model Verification by Scale Bridging In Situ Liquid-Phase Transmission Electron Microscopy and X-Ray Diffraction.

Authors:  Birk Fritsch; Tobias S Zech; Mark P Bruns; Andreas Körner; Saba Khadivianazar; Mingjian Wu; Neda Zargar Talebi; Sannakaisa Virtanen; Tobias Unruh; Michael P M Jank; Erdmann Spiecker; Andreas Hutzler
Journal:  Adv Sci (Weinh)       Date:  2022-07-03       Impact factor: 17.521

4.  In situ monitoring of exopolymer-dependent Mn mineralization on bacterial surfaces.

Authors:  Thaïs Couasnon; Damien Alloyeau; Bénédicte Ménez; François Guyot; Jean-Marc Ghigo; Alexandre Gélabert
Journal:  Sci Adv       Date:  2020-07-03       Impact factor: 14.136

  4 in total

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