Literature DB >> 31243330

A Randomized Trait Community Clustering approach to unveil consistent environmental thresholds in community assembly.

Xavier Triadó-Margarit1, José A Capitán2,3, Mateu Menéndez-Serra1,3, Rüdiger Ortiz-Álvarez1, Vicente J Ontiveros3, Emilio O Casamayor4, David Alonso5.   

Abstract

Similarities and differences of phenotypes within local co-occurring species hold the key to inferring the contribution of stochastic or deterministic processes in community assembly. Developing both phylogenetic-based and trait-based quantitative methods to unravel these processes is a major aim in community ecology. We developed a trait-based approach that: (i) assesses if a community trait clustering pattern is related to increasing environmental constraints along a gradient; and (ii) determines quantitative thresholds for an environmental variable along a gradient to interpret changes in prevailing community assembly drivers. We used a regional set of natural shallow saline ponds covering a wide salinity gradient (0.1-40% w/v). We identify a consistent discrete salinity threshold (ca. 5%) for microbial community assembly drivers. Above 5% salinity a strong environmental filtering prevailed as an assembly force, whereas a combination of biotic and abiotic factors dominated at lower salinities. This method provides a conceptual approach to identify consistent environmental thresholds in community assembly and enables quantitative predictions for the ecological impact of environmental changes.

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Year:  2019        PMID: 31243330      PMCID: PMC6794281          DOI: 10.1038/s41396-019-0454-4

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  40 in total

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Review 3.  Trait-based tests of coexistence mechanisms.

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6.  Improved testing of species traits--environment relationships in the fourth-corner problem.

Authors:  Cajo J F Ter Braak; Anouk Cormont; Stéphane Dray
Journal:  Ecology       Date:  2012-07       Impact factor: 5.499

7.  Abiotic stress tolerance and competition-related traits underlie phylogenetic clustering in soil bacterial communities.

Authors:  Marta Goberna; Jose A Navarro-Cano; Alfonso Valiente-Banuet; Carlos García; Miguel Verdú
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Review 8.  Function and functional redundancy in microbial systems.

Authors:  Stilianos Louca; Martin F Polz; Florent Mazel; Michaeline B N Albright; Julie A Huber; Mary I O'Connor; Martin Ackermann; Aria S Hahn; Diane S Srivastava; Sean A Crowe; Michael Doebeli; Laura Wegener Parfrey
Journal:  Nat Ecol Evol       Date:  2018-04-16       Impact factor: 15.460

9.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

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Journal:  Nat Biotechnol       Date:  2013-08-25       Impact factor: 54.908

Review 10.  The microbial contribution to macroecology.

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Journal:  Front Microbiol       Date:  2014-05-05       Impact factor: 5.640

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  5 in total

1.  Ecological and Metabolic Thresholds in the Bacterial, Protist, and Fungal Microbiome of Ephemeral Saline Lakes (Monegros Desert, Spain).

Authors:  Mateu Menéndez-Serra; Xavier Triadó-Margarit; Emilio O Casamayor
Journal:  Microb Ecol       Date:  2021-03-16       Impact factor: 4.552

Review 2.  Towards sustainable agriculture: rhizosphere microbiome engineering.

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Journal:  Appl Microbiol Biotechnol       Date:  2021-09-11       Impact factor: 5.560

Review 3.  Construction of Environmental Synthetic Microbial Consortia: Based on Engineering and Ecological Principles.

Authors:  Yu Liang; Anzhou Ma; Guoqiang Zhuang
Journal:  Front Microbiol       Date:  2022-02-23       Impact factor: 5.640

4.  Microbial community structure and shift pattern of industry brine after a long-term static storage in closed tank.

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Journal:  Front Microbiol       Date:  2022-09-02       Impact factor: 6.064

5.  The characteristic time of ecological communities.

Authors:  Vicente J Ontiveros; José A Capitán; Emilio O Casamayor; David Alonso
Journal:  Ecology       Date:  2021-01-16       Impact factor: 5.499

  5 in total

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