Literature DB >> 31241827

The multi-faceted regulation of nuclear tRNA gene transcription.

Guillaume Hummel1, Jessica Warren2, Laurence Drouard1.   

Abstract

Transfer RNAs are among the most ancient molecules of life on earth. Beyond their crucial role in protein synthesis as carriers of amino acids, they are also important players in a plethora of other biological processes. Many debates in term of biogenesis, regulation and function persist around these fascinating non-coding RNAs. Our review focuses on the first step of their biogenesis in eukaryotes, i.e. their transcription from nuclear genes. Numerous and complementary ways have emerged during evolution to regulate transfer RNA gene transcription. Here, we will summarize the different actors implicated in this process: cis-elements, trans-factors, genomic contexts, epigenetic environments and finally three-dimensional organization of nuclear genomes.
© 2019 IUBMB Life, 2019 © 2019 IUBMB Life, 71(8):1099-1108, 2019. © 2019 International Union of Biochemistry and Molecular Biology.

Entities:  

Keywords:  RNA polymerase III-dependent transcription; evolution; gene expression and regulation; transfer RNAs

Mesh:

Substances:

Year:  2019        PMID: 31241827     DOI: 10.1002/iub.2097

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  8 in total

1.  Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification.

Authors:  Jessica M Warren; Thalia Salinas-Giegé; Guillaume Hummel; Nicole L Coots; Joshua M Svendsen; Kristen C Brown; Laurence Drouard; Daniel B Sloan
Journal:  RNA Biol       Date:  2020-07-25       Impact factor: 4.652

2.  PltRNAdb: Plant transfer RNA database.

Authors:  Morad M Mokhtar; Achraf El Allali
Journal:  PLoS One       Date:  2022-05-23       Impact factor: 3.752

Review 3.  The Target of Rapamycin Signalling Pathway in Ageing and Lifespan Regulation.

Authors:  Ivana Bjedov; Charalampos Rallis
Journal:  Genes (Basel)       Date:  2020-09-03       Impact factor: 4.096

Review 4.  RNA polymerase III and antiviral innate immune response.

Authors:  Nayef Jarrous; Alexander Rouvinski
Journal:  Transcription       Date:  2021-02-24

5.  Predicting transfer RNA gene activity from sequence and genome context.

Authors:  Bryan P Thornlow; Joel Armstrong; Andrew D Holmes; Jonathan M Howard; Russell B Corbett-Detig; Todd M Lowe
Journal:  Genome Res       Date:  2019-12-19       Impact factor: 9.043

6.  The GATA Transcription Factor Gaf1 Represses tRNAs, Inhibits Growth, and Extends Chronological Lifespan Downstream of Fission Yeast TORC1.

Authors:  María Rodríguez-López; Suam Gonzalez; Olivia Hillson; Edward Tunnacliffe; Sandra Codlin; Victor A Tallada; Jürg Bähler; Charalampos Rallis
Journal:  Cell Rep       Date:  2020-03-10       Impact factor: 9.423

7.  Epigenetic silencing of clustered tRNA genes in Arabidopsis.

Authors:  Guillaume Hummel; Alexandre Berr; Stéfanie Graindorge; Valérie Cognat; Elodie Ubrig; David Pflieger; Jean Molinier; Laurence Drouard
Journal:  Nucleic Acids Res       Date:  2020-10-09       Impact factor: 16.971

Review 8.  Targeted genome editing of plants and plant cells for biomanufacturing.

Authors:  J F Buyel; E Stöger; L Bortesi
Journal:  Transgenic Res       Date:  2021-03-01       Impact factor: 2.788

  8 in total

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