| Literature DB >> 31240881 |
Dong Chul Park1, Si Hyun Kim2, Dongeun Yong3, In Bum Suh4, Young Ree Kim5, Jongyoun Yi6, Wonkeun Song7, Sae Am Song1, Hee Won Moon8, Hae Kyung Lee9, Kyoung Un Park10, Sunjoo Kim11, Seok Hoon Jeong3, Jaehyeon Lee12, Joseph Jeong13, Yu Kyung Kim14, Miae Lee15, Jihyun Cho16, Jong Wan Kim17, Kyeong Seob Shin18, Sang Hyun Hwang19, Jae Woo Chung20, Hye In Woo21, Chae Hoon Lee22, Namhee Ryoo23, Chulhun L Chang6, Hyun Soo Kim7, Jayoung Kim24, Jong Hee Shin25, Soo Hyun Kim25, Mi Kyung Lee26, Seong Gyu Lee27, Sook Jin Jang28, Kyutaeg Lee29, HunSuk Suh30, Yong Hak Sohn31, Min Jung Kwon21, Hee Joo Lee32, Ki Ho Hong33, Kwang Sook Woo34, Chul Min Park35, Jeong Hwan Shin1,36.
Abstract
BACKGROUND: Several factors contribute to differences in Streptococcus pneumoniae serotype distribution. We investigated the serotype distribution and antimicrobial resistance of S. pneumoniae isolated between 2014 and 2016 in Korea.Entities:
Keywords: Antimicrobial resistance; Pneumococcal vaccine; Serotype; Streptococcus pneumoniae
Year: 2019 PMID: 31240881 PMCID: PMC6660335 DOI: 10.3343/alm.2019.39.6.537
Source DB: PubMed Journal: Ann Lab Med ISSN: 2234-3806 Impact factor: 3.464
Distribution of pneumococcal serotypes by patient age (N=1,855)
| Serotype | N (%) | Age group (%) | ||
|---|---|---|---|---|
| ≤5 years (N=248) | 6–64 years (N=673) | ≥65 years (N=934) | ||
| 11A | 188 (10.1) | 12 (4.8) | 77 (11.4) | 99 (10.6) |
| 19A | 163 (8.8) | 30 (12.1) | 55 (8.2) | 78 (8.4) |
| 3 | 158 (8.5) | 2 (0.8) | 60 (8.9) | 96 (10.3) |
| 34 | 151 (8.1) | 13 (5.2) | 62 (9.2) | 76 (8.1) |
| 23A | 136 (7.3) | 45 (18.1) | 47 (7.0) | 44 (4.7) |
| 35B | 115 (6.2) | 16 (6.5) | 33 (4.9) | 66 (7.1) |
| 15A | 94 (5.1) | 12 (4.8) | 38 (5.6) | 44 (4.7) |
| 15B | 85 (4.6) | 31 (12.5) | 30 (4.5) | 24 (2.6) |
| 19F | 79 (4.3) | 7 (2.8) | 25 (3.7) | 47 (5.0) |
| 6A | 72 (3.9) | 4 (1.6) | 20 (3.0) | 48 (5.1) |
| 10A | 63 (3.4) | 20 (8.1) | 29 (4.3) | 14 (1.5) |
| 13 | 59 (3.2) | 4 (1.6) | 18 (2.7) | 37 (4.0) |
| 23F | 51 (2.7) | 1 (0.4) | 12 (1.8) | 38 (4.1) |
| 6C | 43 (2.3) | 6 (2.4) | 21 (3.1) | 16 (1.7) |
| 12F | 37 (2.0) | 7 (2.8) | 20 (3.0) | 10 (1.1) |
| 14 | 35 (1.9) | 11 (1.6) | 24 (2.6) | |
| 22F | 35 (1.9) | 6 (2.4) | 14 (2.1) | 15 (1.6) |
| 6B | 32 (1.7) | 12 (1.8) | 20 (2.1) | |
| 6D | 25 (1.3) | 9 (1.3) | 16 (1.7) | |
| 20 | 21 (1.1) | 1 (0.4) | 8 (1.2) | 12 (1.3) |
| 9V | 19 (1.0) | 7 (1.0) | 12 (1.3) | |
| 7B | 15 (0.8) | 6 (0.9) | 9 (1.0) | |
| 16F | 11 (0.6) | 2 (0.8) | 3 (0.4) | 6 (0.6) |
| 24F | 9 (0.5) | 3 (0.4) | 6 (0.6) | |
| 33F | 9 (0.5) | 2 (0.3) | 7 (0.7) | |
| 23B | 7 (0.4) | 2 (0.8) | 2 (0.3) | 3 (0.3) |
| 9N | 5 (0.3) | 1 (0.1) | 4 (0.4) | |
| 35A | 4 (0.2) | 2 (0.3) | 2 (0.2) | |
| 7F | 4 (0.2) | 3 (0.4) | 1 (0.1) | |
| 38 | 3 (0.2) | 1 (0.4) | 1 (0.1) | 1 (0.1) |
| 17F | 3 (0.2) | 2 (0.3) | 1 (0.1) | |
| 5 | 2 (0.1) | 2 (0.3) | ||
| 8 | 2 (0.1) | 2 (0.3) | ||
| 18C | 2 (0.1) | 1 (0.1) | 1 (0.1) | |
| 4 | 1 (0.1) | 1 (0.1) | ||
| Non-typeable | 117 (6.3) | 26 (10.5) | 34 (5.1) | 57 (6.1) |
Comparison of invasive and noninvasive serotypes by patient age
| Serotype | Total N (%) | Invasive | Noninvasive | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Total N (%) | ≤5 years | 6–64 years | ≥65 years | Total N (%) | ≤ 5 years | 6–64 years | ≥ 65 years | ||
| 11A | 188 (10.1) | 30 (6.8) | 15 | 15 | 158 (11.2) | 12 | 62 | 84 | |
| 19A | 163 (8.8) | 34 (7.8) | 6 | 11 | 17 | 129 (9.1) | 24 | 44 | 61 |
| 3 | 158 (8.5) | 55 (12.6) | 1 | 18 | 36 | 103 (7.3) | 1 | 42 | 60 |
| 34 | 151 (8.1) | 34 (7.8) | 3 | 13 | 18 | 117 (8.3) | 10 | 49 | 58 |
| 23A | 136 (7.3) | 20 (4.6) | 3 | 10 | 7 | 116 (8.2) | 42 | 37 | 37 |
| 35B | 115 (6.2) | 16 (3.7) | 2 | 4 | 10 | 99 (7.0) | 14 | 29 | 56 |
| 15A | 94 (5.1) | 23 (5.3) | 2 | 10 | 11 | 71 (5.0) | 10 | 28 | 33 |
| 15B | 85 (4.6) | 20 (4.6) | 7 | 8 | 5 | 65 (4.6) | 24 | 22 | 19 |
| 19F | 79 (4.3) | 9 (2.1) | 4 | 5 | 70 (4.9) | 7 | 21 | 42 | |
| 6A | 72 (3.9) | 13 (3.0) | 1 | 7 | 5 | 59 (4.2) | 3 | 13 | 43 |
| 10A | 63 (3.4) | 30 (6.8) | 10 | 16 | 4 | 33 (2.3) | 10 | 13 | 10 |
| 13 | 59 (3.2) | 7 (1.6) | 1 | 3 | 3 | 52 (3.7) | 3 | 15 | 34 |
| 23F | 51 (2.7) | 8 (1.8) | 2 | 6 | 43 (3.0) | 1 | 10 | 32 | |
| 6C | 43 (2.3) | 8 (1.8) | 3 | 5 | 35 (2.5) | 6 | 18 | 11 | |
| 12F | 37 (2.0) | 29 (6.6) | 5 | 18 | 6 | 8 (0.6) | 2 | 2 | 4 |
| 14 | 35 (1.9) | 16 (3.7) | 4 | 12 | 19 (1.3) | 7 | 12 | ||
| 22F | 35 (1.9) | 17 (3.9) | 3 | 7 | 7 | 18 (1.3) | 3 | 7 | 8 |
| 6B | 32 (1.7) | 7 (1.6) | 2 | 5 | 25 (1.8) | 10 | 15 | ||
| 6D | 25 (1.3) | 6 (1.4) | 3 | 3 | 19 (1.3) | 6 | 13 | ||
| 20 | 21 (1.1) | 9 (2.1) | 5 | 4 | 12 (0.8) | 1 | 3 | 8 | |
| 9V | 19 (1.0) | 6 (1.4) | 4 | 2 | 13 (0.9) | 3 | 10 | ||
| 7B | 15 (0.8) | 4 (0.9) | 1 | 3 | 11 (0.8) | 5 | 6 | ||
| 16F | 11 (0.6) | 2 (0.5) | 1 | 1 | 9 (0.6) | 2 | 2 | 5 | |
| 24F | 9 (0.5) | 5 (1.1) | 2 | 3 | 4 (0.3) | 1 | 3 | ||
| 33F | 9 (0.5) | 3 (0.7) | 1 | 2 | 6 (0.4) | 1 | 5 | ||
| 23B | 7 (0.4) | 2 (0.5) | 1 | 1 | 5 (0.4) | 1 | 2 | 2 | |
| 9N | 5 (0.3) | 2 (0.5) | 2 | 3 (0.2) | 1 | 2 | |||
| 35A | 4 (0.2) | 1 (0.2) | 1 | 3 (0.2) | 1 | 2 | |||
| 7F | 4 (0.2) | 1 (0.2) | 1 | 3 (0.2) | 2 | 1 | |||
| 38 | 3 (0.2) | 3 (0.7) | 1 | 1 | 1 | ||||
| 17F | 3 (0.2) | 1 (0.2) | 1 | 2 (0.1) | 1 | 1 | |||
| 5 | 2 (0.1) | 1 (0.2) | 1 | 1 (0.1) | 1 | ||||
| 8 | 2 (0.1) | 2 (0.5) | 2 | ||||||
| 18C | 2 (0.1) | 2 (0.1) | 1 | 1 | |||||
| 4 | 1 (0.1) | 1 (0.2) | 1 | ||||||
| Non-typeable | 117 | 13 (3.0) | 2 | 5 | 6 | 104 (7.3) | 24 | 29 | 51 |
| Total | 1,855 | 438 | 48 | 185 | 205 | 1,417 | 200 | 488 | 729 |
Prevalence of vaccine serotypes by patient age, specimen type, and period
| Vaccine type | Total (N=1,855) (%) | Invasive (%) | Non-invasive (%) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Total (N=438) | Age group | Total (N = 1,417) | Age group | ||||||
| ≤5 years (N=48) | 6–64 years (N=185) | ≥65 years (N=205) | ≤ 5 years (N = 200) | 6–64 years (N = 488) | ≥ 65 years (N = 729) | ||||
| PCV7 | 219 (11.8) | 47 (10.7) | 0 (0) | 17 (9.2) | 30 (14.6) | 172 (12.1) | 8 (4.0) | 52 (10.7) | 112 (15.4) |
| PCV10 | 225 (12.1) | 49 (11.2) | 0 (0) | 19 (10.3) | 30 (14.6) | 176 (12.4) | 8 (4.0) | 55 (11.3) | 113 (15.5) |
| PCV13 | 618 (33.3) | 151 (34.5) | 8 (16.7) | 55 (29.7) | 88 (42.9) | 467 (33.0) | 36 (18.0) | 154 (31.6) | 277 (38.0) |
| PPSV23 | 994 (53.6) | 281 (64.2) | 32 (66.7) | 121 (65.4) | 128 (62.4) | 713 (50.3) | 85 (42.5) | 253 (51.8) | 375 (51.4) |
| VTs | 1,066 (57.5) | 294 (67.1) | 33 (68.8) | 128 (69.2) | 133 (64.9) | 772 (54.5) | 88 (44.0) | 266 (54.5) | 418 (57.3) |
| NVTs | 672 (36.2) | 131 (29.9) | 13 (27.1) | 52 (28.1) | 66 (32.2) | 541 (38.2) | 88 (44.0) | 193 (39.5) | 260 (35.7) |
| Non-typeable | 117 (6.3) | 13 (3.0) | 2 (4.2) | 5 (2.7) | 6 (2.9) | 104 (7.3) | 24 (12.0) | 29 (5.9) | 51 (7.0) |
Abbreviations: PCV, pneumococcal conjugate vaccine; PPSV23, pneumococcal polysaccharide vaccine 23; VTs, vaccine serotypes; NVTs, non-vaccine serotypes.
Resistance to antimicrobial agents by specimen type
| Antimicrobial agent | Total (N = 1,855) | Invasive (N = 438) | Non-invasive (N = 1,417) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| I, N (%) | R, N (%) | S, N (%) | I, N (%) | R, N (%) | S, N (%) | I, N (%) | R, N (%) | S, N (%) | |
| Cefotaxime | 287 (18.8) | 191 (12.5) | 1,045 (68.6) | 56 (14.7) | 31 (8.1) | 295 (77.2) | 231 (20.2) | 160 (14.0) | 750 (65.7) |
| Ceftriaxone | 142 (10.9) | 157 (12.0) | 1,006 (77.1) | 36 (11.3) | 16 (5.0) | 268 (83.3) | 106 (10.8) | 141 (14.3) | 738 (74.9) |
| Clindamycin | 8 (0.5) | 1,079 (69.2) | 473 (30.3) | 1 (0.3) | 260 (66.0) | 133 (33.8) | 7 (0.6) | 819 (70.2) | 340 (29.2) |
| Erythromycin | 13 (0.7) | 1,507 (81.9) | 319 (17.3) | 2 (0.5) | 336 (77.8) | 94 (21.8) | 11 (0.8) | 1,171 (83.2) | 225 (16.0) |
| Levofloxacin | 12 (0.7) | 168 (9.4) | 1,604 (89.9) | 3 (0.7) | 18 (4.4) | 390 (94.9) | 9 (0.7) | 150 (10.9) | 1,214 (88.4) |
| Linezolid | 0 (0) | 3 (0.3) | 1,162 (99.7) | 0 (0) | 3 (0.9) | 325 (99.1) | 0 (0) | 0 (0) | 837 (100) |
| Penicillin | 227 (14.0) | 370 (22.8) | 1,024 (63.2) | 31 (9.0) | 73 (21.1) | 242 (69.9) | 196 (15.4) | 297 (23.3) | 782 (61.3) |
| Tetracycline | 24 (1.4) | 1,319 (76.7) | 376 (21.9) | 5 (1.3) | 299 (75.9) | 90 (22.8) | 19 (1.4) | 1,020 (77.0) | 286 (21.6) |
| Trimethoprim-Sulfamethoxazole | 174 (10.0) | 812 (46.9) | 746 (43.1) | 36 (8.7) | 158 (38.3) | 219 (53.0) | 138 (10.5) | 654 (49.6) | 527 (40.0) |
| Vancomycin | 0 (0) | 0 (0) | 1,855 (100) | 0 (0) | 0 (0) | 438 (100) | 0 (0) | 0 (0) | 1,417 (100) |
Abbreviations: I, intermediate resistance; R, resistant; S, susceptible.
Resistance to antimicrobial agents by patient age
| Antimicrobial agent | ≤5 years (N=248) | ≥ 65 years (N = 934) | 6–64 years (N=673) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| I (%) | R (%) | S (%) | I (%) | R (%) | S (%) | I (%) | R (%) | S (%) | |
| Cefotaxime | 38 (24.8) | 18 (11.8) | 97 (63.4) | 105 (26.9) | 74 (18.9) | 391 (100) | 144 (18.0) | 99 (12.4) | 557 (69.6) |
| Ceftriaxone | 20 (14.6) | 22 (16.1) | 95 (69.3) | 46 (9.3) | 65 (13.2) | 381 (77.4) | 76 (11.2) | 70 (10.4) | 530 (78.4) |
| Clindamycin | 1 (0.6) | 127 (73.8) | 44 (25.6) | 2 (0.3) | 394 (67.1) | 191 (32.5) | 5 (0.6) | 558 (69.7) | 238 (29.7) |
| Erythromycin | 0 (0) | 223 (91.8) | 20 (8.2) | 4 (0.6) | 534 (80.1) | 129 (19.3) | 9 (1.0) | 750 (80.7) | 170 (18.3) |
| Levofloxacin | 0 (0) | 2 (0.9) | 233 (99.1) | 5 (0.8) | 60 (9.2) | 585 (90.0) | 7 (0.8) | 106 (11.8) | 786 (87.4) |
| Linezolid | 0 (0) | 0 (0) | 129 (100) | 0 (0) | 2 (0.4) | 443 (99.6) | 0 (0) | 1 (0.2) | 590 (99.8) |
| Penicillin | 32 (14.3) | 38 (17) | 154 (68.8) | 76 (12.9) | 152 (25.8) | 361 (61.3) | 119 (14.7) | 180 (22.3) | 509 (63.0) |
| Tetracycline | 1 (0.4) | 200 (87.3) | 28 (12.2) | 6 (1.0) | 464 (75.2) | 147 (23.8) | 17 (1.9) | 655 (75.0) | 201 (23.0) |
| Trimethoprim-Sulfamethoxazole | 32 (14.6) | 108 (49.3) | 79 (36.1) | 64 (10.1) | 285 (45.0) | 285 (45.0) | 78 (8.9) | 419 (47.7) | 382 (43.5) |
| Vancomycin | 0 (0) | 0 (0) | 248 (100) | 0 (0) | 0 (0) | 673 (100) | 0 (0) | 0 (0) | 934 (100) |
Abbreviations: I, intermediate resistance; R, resistant; S, susceptible.
Fig. 1Serotype distribution of MDR S. pneumoniae isolates.
Abbreviation: MDR, multi-drug resistant.