Literature DB >> 31229934

Quantification of HIV-DNA and residual viremia in patients starting ART by droplet digital PCR: Their dynamic decay and correlations with immunological parameters and virological success.

Claudia Alteri1, Rossana Scutari2, Christof Stingone3, Gaetano Maffongelli3, Marta Brugneti2, Francesca Falasca4, Salvatore Martini5, Ada Bertoli2, Ombretta Turriziani4, Loredana Sarmati3, Nicola Coppola5, Massimo Andreoni3, Maria Mercedes Santoro2, Carlo-Federico Perno6, Francesca Ceccherini-Silberstein2, Valentina Svicher2.   

Abstract

BACKGROUND: Accurate quantification of total HIV-DNA and residual-viremia by sensitive assays is extremely useful to optimize monitoring of ART-treated patients.
OBJECTIVES: To evaluate the performances of two ddPCR-based assays for HIV-DNA and residual-viremia quantification, and the correlations of pre-ART HIV-DNA with plasma HIV-RNA, CD4 + T, CD4/CD8 and virological-success (VS) during first-line ART. STUDY
DESIGN: Plasma HIV-RNA, total HIV-DNA, CD4 + T, CD4/CD8 were evaluated at baseline of ART, at VS (viral-load <50copies/ml), and at 6 months after VS (6moVS) in 57 newly-diagnosed HIV-1 infected patients, receiving first-line modern ART. HIV-DNA (log10 copies/106CD4 + T) and residual-viremia (copies/ml) were measured with in-house ddPCR assays. Correlations were assessed by Spearman and Jonckheere-Terpstra tests.
RESULTS: HIV-DNA and residual-viremia assays showed a good linear trend between the expected and obtained values (R2 = 0.9913 and 0.9945); lower limits of detection were 32 copies/106CD4 + T and 2 copies/ml, respectively. At baseline, median (IQR) plasma HIV-RNA and HIV-DNA were 4.88(4.28-5.36)log10 copies/ml and 4.00(3.36-4.51) log10 copies/106CD4 + T cells. Residual-viremia was 8(2-26) and 4(2-12) copies/ml at VS and 6moVS. Pre-ART HIV-DNA positively correlated with plasma HIV-RNA at BL (Rho = 0.708, p < 0.001), and with residual-viremia at VS (Rho:0.383,p = 0.002). Notably, higher HIV-DNA correlated with longer time to achieve VS (median[IQR],weeks: 17.8[12.3-29.0] for HIV-DNA ≥4.5 vs. 7.4[4.1-8.7] for HIV-DNA<4.5, p < 0.001). Furthermore, pre-ART HIV-DNA negatively correlated with CD4 + T and CD4/CD8 at baseline, VS and 6moVS.
CONCLUSIONS: Our results support the adoption of ddPCR-based assays for both HIV-DNA and residual-viremia quantifications and corroborate that pre-ART HIV-DNA is an excellent indicator in predicting viroimmunological response and VS in patients starting ART.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Antiretroviral treatment; HIV-1; HIV-DNA; HIV-reservoir; Residual viremia; ddPCR

Mesh:

Substances:

Year:  2019        PMID: 31229934     DOI: 10.1016/j.jcv.2019.06.004

Source DB:  PubMed          Journal:  J Clin Virol        ISSN: 1386-6532            Impact factor:   3.168


  13 in total

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Authors:  Yann Le Duff; Kathleen Gärtner; Eloise J Busby; Annalisa Dalzini; Sivapragashini Danaviah; José Luis Jiménez Fuentes; Carlo Giaquinto; Jim F Huggett; Matthew Hurley; Anne-Geneviève Marcellin; María Ángeles Muñoz-Fernández; Denise M O'Sullivan; Deborah Persaud; Laura Powell; Peter Rigsby; Paolo Rossi; Anita de Rossi; Lilly Siems; Theresa Smit; Sarah A Watters; Neil Almond; Eleni Nastouli
Journal:  Microbiol Spectr       Date:  2022-06-06

2.  Accuracy of real-time PCR and digital PCR for the monitoring of total HIV DNA under prolonged antiretroviral therapy.

Authors:  Constance Renault; Karine Bolloré; Amandine Pisoni; Camille Motto-Ros; Philippe Van de Perre; Jacques Reynes; Edouard Tuaillon
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Review 4.  Droplet digital PCR of viral ‎DNA/RNA, current progress, challenges, and future perspectives.

Authors:  Amir Asri Kojabad; Mahdieh Farzanehpour; Hadi Esmaeili Gouvarchin Galeh; Ruhollah Dorostkar; Ali Jafarpour; Masoumeh Bolandian; Majid Mirzaei Nodooshan
Journal:  J Med Virol       Date:  2021-03-11       Impact factor: 20.693

5.  Prevalence and risk of residual viremia after ART in low- and middle-income countries: A cross-sectional study.

Authors:  Sivaporn Gatechompol; Lu Zheng; Yajing Bao; Anchalee Avihingsanon; Stephen J Kerr; Nagalingeswaran Kumarasamy; James G Hakim; Frank Maldarelli; Robert J Gorelick; Jorden L Welker; Jeffrey D Lifson; Mina C Hosseinipour; Joseph J Eron; Kiat Ruxrungtham
Journal:  Medicine (Baltimore)       Date:  2021-09-03       Impact factor: 1.817

6.  External quality assessment of HIV-1 DNA quantification assays used in the clinical setting in Italy.

Authors:  Ilaria Vicenti; Filippo Dragoni; Alessia Giannini; Anna Casabianca; Francesca Lombardi; Laura Di Sante; Ombretta Turriziani; Sara Racca; Stefania Paolucci; Alessia Lai; Isabella Bon; Isabella Abbate; Gabriella Rozera; Simone Belmonti; Rossana Scutari; Claudia Alteri; Francesco Saladini; Maurizio Zazzi
Journal:  Sci Rep       Date:  2022-02-28       Impact factor: 4.379

7.  miRNA Expression Profiling in Subcutaneous Adipose Tissue of Monozygotic Twins Discordant for HIV Infection: Validation of Differentially Expressed miRNA and Bioinformatic Analysis.

Authors:  Elena Bresciani; Nicola Squillace; Valentina Orsini; Roberta Piolini; Laura Rizzi; Laura Molteni; Ramona Meanti; Alessandro Soria; Giuseppe Lapadula; Alessandra Bandera; Andrea Gori; Paolo Bonfanti; Robert John Omeljaniuk; Vittorio Locatelli; Antonio Torsello
Journal:  Int J Mol Sci       Date:  2022-03-23       Impact factor: 5.923

8.  Impact of Raltegravir or Efavirenz on Cell-Associated Human Immunodeficiency Virus-1 (HIV-1) Deoxyribonucleic Acid and Systemic Inflammation in HIV-1/Tuberculosis Coinfected Adults Initiating Antiretroviral Therapy.

Authors:  Héloïse M Delagreverie; Claire Bauduin; Nathalie De Castro; Beatriz Grinsztejn; Marc Chevrier; Fanélie Jouenne; Samia Mourah; Issa Kalidi; Jose Henrique Pilotto; Carlos Brites; Nemora Tregnago Barcellos; Ali Amara; Linda Wittkop; Jean-Michel Molina; Constance Delaugerre
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9.  Detection and quantification of SARS-CoV-2 by droplet digital PCR in real-time PCR negative nasopharyngeal swabs from suspected COVID-19 patients.

Authors:  Claudia Alteri; Valeria Cento; Maria Antonello; Luna Colagrossi; Marco Merli; Nicola Ughi; Silvia Renica; Elisa Matarazzo; Federica Di Ruscio; Livia Tartaglione; Jacopo Colombo; Chiara Grimaldi; Stefania Carta; Alice Nava; Valentino Costabile; Chiara Baiguera; Daniela Campisi; Diana Fanti; Chiara Vismara; Roberto Fumagalli; Francesco Scaglione; Oscar Massimiliano Epis; Massimo Puoti; Carlo Federico Perno
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Review 10.  Quantification of Total HIV DNA as a Marker to Measure Viral Reservoir: Methods and Potential Implications for Clinical Practice.

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