Literature DB >> 31228152

Rat Genome Databases, Repositories, and Tools.

Stanley J F Laulederkind1, G Thomas Hayman2, Shur-Jen Wang2, Matthew J Hoffman2,3,4, Jennifer R Smith2, Elizabeth R Bolton2, Jeff De Pons2, Marek A Tutaj2, Monika Tutaj2, Jyothi Thota2, Melinda R Dwinell3,4, Mary Shimoyama2.   

Abstract

Resources for rat researchers are extensive, including strain repositories and databases all around the world. The Rat Genome Database (RGD) serves as the primary rat data repository, providing both manual and computationally collected data from other databases.

Entities:  

Keywords:  Analysis; Annotation; Database; Disease; Gene; Genomics; Model organism; Pathway; Phenotype; Visualization

Mesh：

Year:  2019        PMID： 31228152     DOI： 10.1007/978-1-4939-9581-3_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  10 in total

1.  Widespread Dysregulation of Long Noncoding Genes Associated With Fatty Acid Metabolism, Cell Division, and Immune Response Gene Networks in Xenobiotic-exposed Rat Liver.

Authors:  Kritika Karri; David J Waxman
Journal:  Toxicol Sci       Date:  2020-04-01       Impact factor: 4.849

Review 2.  Facilitating Complex Trait Analysis via Reduced Complexity Crosses.

Authors:  Camron D Bryant; Desmond J Smith; Kathleen M Kantak; Thaddeus S Nowak; Robert W Williams; M Imad Damaj; Eva E Redei; Hao Chen; Megan K Mulligan
Journal:  Trends Genet       Date:  2020-05-29       Impact factor: 11.639

3.  Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats.

Authors:  Younhee Shin; Sathiyamoorthy Subramaniyam; Jin-Mi Chun; Ji-Hyeon Jeon; Ji-Man Hong; Hojin Jung; Boseok Seong; Chul Kim
Journal:  Plants (Basel)       Date:  2021-06-02

4.  A rat model of severe VWD by elimination of the VWF gene using CRISPR/Cas9.

Authors:  Jessica Garcia; Veronica H Flood; Sandra L Haberichter; Scot A Fahs; Jeremy G Mattson; Aron M Geurts; Mark Zogg; Hartmut Weiler; Qizhen Shi; Robert R Montgomery
Journal:  Res Pract Thromb Haemost       Date:  2019-12-29

5.  Alliance of Genome Resources Portal: unified model organism research platform.

Authors: 
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

6.  The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research.

Authors:  M L Kaldunski; J R Smith; G T Hayman; K Brodie; J L De Pons; W M Demos; A C Gibson; M L Hill; M J Hoffman; L Lamers; S J F Laulederkind; H S Nalabolu; K Thorat; J Thota; M Tutaj; M A Tutaj; M Vedi; S J Wang; S Zacher; M R Dwinell; A E Kwitek
Journal:  Mamm Genome       Date:  2021-11-05       Impact factor: 2.957

7.  MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses.

Authors:  Mahima Vedi; Harika S Nalabolu; Chien-Wei Lin; Matthew J Hoffman; Jennifer R Smith; Kent Brodie; Jeffrey L De Pons; Wendy M Demos; Adam C Gibson; G Thomas Hayman; Morgan L Hill; Mary L Kaldunski; Logan Lamers; Stanley J F Laulederkind; Ketaki Thorat; Jyothi Thota; Monika Tutaj; Marek A Tutaj; Shur-Jen Wang; Stacy Zacher; Melinda R Dwinell; Anne E Kwitek
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.562

8.  Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services.

Authors:  Zhi-Liang Hu; Carissa A Park; James M Reecy
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

9.  The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.

Authors:  Jennifer R Smith; G Thomas Hayman; Shur-Jen Wang; Stanley J F Laulederkind; Matthew J Hoffman; Mary L Kaldunski; Monika Tutaj; Jyothi Thota; Harika S Nalabolu; Santoshi L R Ellanki; Marek A Tutaj; Jeffrey L De Pons; Anne E Kwitek; Melinda R Dwinell; Mary E Shimoyama
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

10.  A unified nomenclature for vertebrate olfactory receptors.

Authors:  Tsviya Olender; Tamsin E M Jones; Elspeth Bruford; Doron Lancet
Journal:  BMC Evol Biol       Date:  2020-04-15       Impact factor: 3.260
  10 in total

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