| Literature DB >> 31227693 |
Tore Skotland1, Kirsten Sandvig2,3.
Abstract
Various studies have demonstEntities:
Mesh:
Substances:
Year: 2019 PMID: 31227693 PMCID: PMC6588574 DOI: 10.1038/s41467-019-10711-1
Source DB: PubMed Journal: Nat Commun ISSN: 2041-1723 Impact factor: 14.919
The most common lipid classes in membranes
| Lipid class/abbreviation | R1 | R2 | Headgroup |
|---|---|---|---|
| Phosphatidylcholine/PC | FA | FA | Choline |
| Lysophosphatidylcholine/LPCa | FA | H | |
| Ether-linked PC: PC O, PC Pa | Alkyl, alkenyl | FA | |
| Phosphatidylserine/PS | FA | FA | Serine |
| Phosphatidylethanolamine/PE | FA | FA | Ethanolamine |
| Phosphatidylinositol/PI | FA | FA | Inositol |
| Phosphatidylglycerol/PG | FA | FA | Glycerol |
| Phosphatidic acid/PA | FA | FA | H |
| Sphingomyelin/SM | LCB | FA | Phosphocholine |
| Glycosphingolipids/GSLb | LCB | FA | Carbohydrates |
FA fatty acyl group, LCB long-chain base
aLysolipids and ether-linked lipids may occur in several lipid classes, but are for simplicity shown for PC only
bStructures of the high number of glycosphingolipid classes (including Gb3 and GM1 discussed here) are shown in ref. [5].
Fig. 1Structures of glycerophospholipids and sphingolipids. The lipids shown are PS 18:0/18:1 (top) and SM d18:1/24:0 (bottom). Different head groups are giving rise to the various lipid classes (Table 1) and different fatty acyl groups result in various species within the class. Note that sphingolipids often contain N-amidated fatty acyl groups much longer than those most common in glycerophospholipids. The sphingoid base of SM d18:1/24:0 is highlighted in red. It should be noted that the double bond C18:1 (oleic acid) is in cis configuration and that the double bonds of all fatty acyl groups of phospholipids and sphingolipids have a cis configuration. The structures have been made by using the structure drawing tools available at Lipid Maps (www.lipidmaps.org)
Fig. 2Illustration of interdigitation between the two membrane leaflets. a Multicomponent bilayer where SM d18:1/24:0 molecules are shown as yellow sticks with the last eight carbon atoms depicted as red balls. Lipids in the outer leaflet are shown as transparent blue glass, while lipids in the inner leaflet are described as transparent grey glass. For clarity SM d18:1/24:0 molecules are marked only in the central part. b Model for a bilayer with PS 18:0/18:1 and cholesterol in the inner leaflet and SM d18:1/16:0 and cholesterol in the outer leaflet. c Similar to B, but SM d18:1/16:0 has been exchanged with SM d18:1/24:0. Blue colour is used for the outer leaflet and yellow for the inner monolayer. Note that the N-amidated fatty acyl group med 24 carbon atoms (in C) are penetrating deeper into the opposite leaflet than the species with 16 carbon atoms (in b). For more details see ref. [52], from where this figure is reproduced
Fig. 3Schematic model of the lipid bilayer of exosomes. The number of lipid molecules (excluding cholesterol) shown in the outer (29) and inner (21) leaflet is close to the ratio for the outer and inner surface of exosomes with a diameter of 70 nm. The lipid composition of the membrane in this simplified illustration is based on the quantitative lipidomic data reported for 22 lipid classes of exosomes excreted from PC-3 cells[11], i.e.,16 SM, 13 PC, 12 PS, 6 PE, 3 PE O (PE ethers) and 39 molecules of cholesterol (assuming a close to symmetric distribution of cholesterol between the two leaflets). In the right part of the membrane, a possible handshaking between the very-long-chain sphingolipids in the outer leaflet and PS 18:0/18:1 in the inner leaflet in the presence of cholesterol is illustrated. In the rest of the membrane, the lipids are distributed more or less evenly. Nine out of the 16 SM molecules shown contain a very-long-chain N-amidated fatty acyl group in accordance with the data published[11]. The figure is reproduced from ref. [45]
Percent of PS 18:0/18:1, PS 16:0/18:1 and PS species with two saturated FAs
| Cell line | Number of PS species reported | PS 18:0/18:1 (% of total PS)a | PS 16:0/18:1 (% of total PS)a | Saturated PS (% of total PS)b | Refs. |
|---|---|---|---|---|---|
| PC-3 | 30 | ~33 | ~11 | <2c |
[ |
| HEp-2 | 20 | ~60 | ~7 | <5d |
[ |
| PSA3 (CHO) | 9 | ~45e | ~2f | <5g |
[ |
| HeLa | 30 | ~22e | ~14f | <3h |
[ |
| MT4 | 30 | ~29e | ~3f | <1h |
[ |
| A549 | 10 | ~40e | ~24f | <3g |
[ |
| Mouse fibroblasts | 15 | ~51e | ~11f | <2i |
[ |
aThe values given are estimated from the data reported (partly given only in figures) in the publications referred to
bThe maximum amount of saturated PS species is estimated. Thus, if data for PS 32:0, PS 34:0 or PS 36:0 are not reported it is assumed that they are present in amounts close to the lowest value reported for PS species
c~1% of PS 16:0/18:0 and <0.05% of both PS 16:0/16:0 and PS 18:0/18:0
d~3% of PS 16:0/18:0 and very small amounts of PS 16:0/16:0 and PS 18:0/18:0 were detected
eAssuming all PS 36:1 is PS 18:0/18:1
fAssuming all PS 34:1 is PS 16:0/18:1; thus no PS 18:0/16:1
gPS species with two saturated FAs were not reported
hPS 36:0 and PS 40:0 were quantified; PS 32:0 or PS 34:0 were not reported
iPS 32:0 was the only species reported with two saturated FAs.
Comparison of data obtained for PS 18:0/18:1 with those obtained for other PS species
| Methods used to generate data | Conclusions |
|---|---|
| MS analyses of cells | PS 18:0/18:1 is by far the most abundant PS species in most cell lines (see Table |
| MS analyses of exosomes | PS 18:0/18:1 constitute ~40% of total PS species in exosomes released from PC-3 cells and could occupy ~80% of the area of the inner leaflet covered by the very-long-chain sphingolipids in the outer leaflet[ |
| Molecular dynamic simulation studies of the interdigitation between PS and sphingolipids | PS 18:0/18:1 was the only species giving increased interdigitation with SM d18:1/24:0 in the presence of cholesterol, and interdigitation was stronger with PS 18:0/18:1 than with PS 16:0/18:1[ |
| Shielding cholesterol from cholesterol oxidase | PS 18:0/18:1 better than PS 16:0/18:1, PS 18:1/18:1 and PS 16:0/18:2[ |
| Clustering with cholesterol in liposomes | PS 18:0/18:1 better than PS 16:0/18:1, PS 18:1/18:1 and PS 16:0/18:2[ |
| Clustering of GPI-AP | PS 18:0/18:1 similar to PS 18:0/18:0; better than PS 18:1/18:1 and PS 12:0/12:0[ |
Examples of PS-binding proteins
| Proteins | Function |
|---|---|
| Rho GTPases | A family of 20 proteins in mammals controlling endocytosis, cell migration, cell progression and morphology[ |
| Rab GTPases and Rab11-FIPsa | Distinct associations between the PS-probe LactC2, Rab GTPases and Rab11-FIPs, suggesting that C2 domains are not the sole mechanism for Rab11-FIPs to associate with PS-containing membranes[ |
| K-Ras | K-Ras (see[ |
| Protein kinase C | Enzyme family controlling the function of other proteins through phosphorylations[ |
| Akt (Protein kinase B) | Activation of Akt mediates downstream responses through protein phosphorylations; Akt activation relies on binding to both PI(3,4,5)P3 and PS[ |
| EHD1 | Transport through recycling endosomes[ |
| Evectin-2 | Retrograde transport through endosomes to the Golgi apparatus[ |
| ATP9A | Flippase colocalizing with PS in endosomes[ |
| Synaptotagmin | Ca2+-triggered PS binding has multiple functions in exocytosis, including stabilisation of open fusion pores by retarding the rate of fusion pore dilation[ |
| Cavins | Cavins contain PS-binding domains; cavins are able to associate into oligomers and are present in caveolae[ |
| Caveolins | Caveolins are together with cavins important for formation of caveolae and can as cavins form oligomers[ |
| Myosin-1A | Myosin-1A binds to liposomes composed of PS and PI (4,5)P2 and colocalized with PS-binding and PI(4,5)P2-binding probes. Only the PS-binding probe (Lact-C2) reduced brush border targeting of a C-terminal domain of myosin-1A[ |
| Spectrin | PS-binding sites identified[ |
| Proteins transporting PS from ER to the plasma membrane | Oxysterol-binding proteins in |
aFIPs: family interacting proteins.