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Literature DB >> 31219951

RNA-seq data in pain research-an illustrated guide.

Megan Crow¹, Franziska Denk².

Abstract

Entities: Chemical

Mesh：

Substances：
RNA

Year: 2019 PMID： 31219951 PMCID： PMC7061694 DOI： 10.1097/j.pain.0000000000001562

Source DB: PubMed Journal: Pain ISSN： 0304-3959 Impact factor: 7.926

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20 in total

1. Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data.

Authors: Anton Zoubarev; Kelsey M Hamer; Kiran D Keshav; E Luke McCarthy; Joseph Roy C Santos; Thea Van Rossum; Cameron McDonald; Adam Hall; Xiang Wan; Raymond Lim; Jesse Gillis; Paul Pavlidis
Journal: Bioinformatics Date: 2012-07-10 Impact factor: 6.937

Review 2. Gene expression omnibus: microarray data storage, submission, retrieval, and analysis.

Authors: Tanya Barrett; Ron Edgar
Journal: Methods Enzymol Date: 2006 Impact factor: 1.600

3. Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations.

Authors: Susanne C van den Brink; Fanny Sage; Ábel Vértesy; Bastiaan Spanjaard; Josi Peterson-Maduro; Chloé S Baron; Catherine Robin; Alexander van Oudenaarden
Journal: Nat Methods Date: 2017-09-29 Impact factor: 28.547

4. Angiotensin II Triggers Peripheral Macrophage-to-Sensory Neuron Redox Crosstalk to Elicit Pain.

Authors: Andrew J Shepherd; Bryan A Copits; Aaron D Mickle; Páll Karlsson; Suraj Kadunganattil; Simon Haroutounian; Satya M Tadinada; Annette D de Kloet; Manouela V Valtcheva; Lisa A McIlvried; Tayler D Sheahan; Sanjay Jain; Pradipta R Ray; Yuriy M Usachev; Gregory Dussor; Eric G Krause; Theodore J Price; Robert W Gereau; Durga P Mohapatra
Journal: J Neurosci Date: 2018-07-05 Impact factor: 6.167

5. Nociceptor Translational Profiling Reveals the Ragulator-Rag GTPase Complex as a Critical Generator of Neuropathic Pain.

Authors: Salim Megat; Pradipta R Ray; Jamie K Moy; Tzu-Fang Lou; Paulino Barragán-Iglesias; Yan Li; Grishma Pradhan; Andi Wanghzou; Ayesha Ahmad; Michael D Burton; Robert Y North; Patrick M Dougherty; Arkady Khoutorsky; Nahum Sonenberg; Kevin R Webster; Gregory Dussor; Zachary T Campbell; Theodore J Price
Journal: J Neurosci Date: 2018-11-20 Impact factor: 6.167

6. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

Authors: Georgi K Marinov; Brian A Williams; Ken McCue; Gary P Schroth; Jason Gertz; Richard M Myers; Barbara J Wold
Journal: Genome Res Date: 2013-12-03 Impact factor: 9.043

7. A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium.

Authors:
Journal: Nat Biotechnol Date: 2014-08-24 Impact factor: 54.908

RNA-seq data in pain research-an illustrated guide.

1. Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data.

Review 2. Gene expression omnibus: microarray data storage, submission, retrieval, and analysis.

3. Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations.

4. Angiotensin II Triggers Peripheral Macrophage-to-Sensory Neuron Redox Crosstalk to Elicit Pain.

5. Nociceptor Translational Profiling Reveals the Ragulator-Rag GTPase Complex as a Critical Generator of Neuropathic Pain.

6. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

7. A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium.

8. Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor.

9. A web server for comparative analysis of single-cell RNA-seq data.

10. Massive mining of publicly available RNA-seq data from human and mouse.

1. Microarray analysis of potential biomarkers of brachial plexus avulsion caused neuropathic pain in male rat.

Review 2. A Guide to Understanding "State-of-the-Art" Basic Research Techniques in Anesthesiology.