| Literature DB >> 31213979 |
Csaba Vastagh1, Norbert Solymosi2, Imre Farkas1, Zsolt Liposits1,3.
Abstract
In proestrus, the changing gonadal hormone milieu alters the physiological properties of GnRH neurons and contributes to the development of the GnRH surge. We hypothesized that proestrus also influences the expression of different ion channel genes in mouse GnRH neurons. Therefore, we performed gene expression profiling of GnRH neurons collected from intact, proestrous and metestrous GnRH-GFP transgenic mice, respectively. Proestrus changed the expression of 37 ion channel and 8 calcium homeostasis-regulating genes. Voltage-gated sodium channels responded with upregulation of three alpha subunits (Scn2a1, Scn3a, and Scn9a). Within the voltage-gated potassium channel class, Kcna1, Kcnd3, Kcnh3, and Kcnq2 were upregulated, while others (Kcna4, Kcnc3, Kcnd2, and Kcng1) underwent downregulation. Proestrus also had impact on inwardly rectifying potassium channel subunits manifested in enhanced expression of Kcnj9 and Kcnj10 genes, whereas Kcnj1, Kcnj11, and Kcnj12 subunit genes were downregulated. The two-pore domain potassium channels also showed differential expression with upregulation of Kcnk1 and reduced expression of three subunit genes (Kcnk7, Kcnk12, and Kcnk16). Changes in expression of chloride channels involved both the voltage-gated (Clcn3 and Clcn6) and the intracellular (Clic1) subtypes. Regarding the pore-forming alpha-1 subunits of voltage-gated calcium channels, two (Cacna1b and Cacna1h) were upregulated, while Cacna1g showed downregulation. The ancillary subunits were also differentially regulated (Cacna2d1, Cacna2d2, Cacnb1, Cacnb3, Cacnb4, Cacng5, Cacng6, and Cacng8). In addition, ryanodine receptor 1 (Ryr1) gene was downregulated, while a transient receptor potential cation channel (Trpm3) gene showed enhanced expression. Genes encoding proteins regulating the intracellular calcium homeostasis were also influenced (Calb1, Hpca, Hpcal1, Hpcal4, Cabp7, Cab 39l, and Cib2). The differential expression of genes coding for ion channel proteins in GnRH neurons at late proestrus indicates that the altering hormone milieu contributes to remodeling of different kinds of ion channels of GnRH neurons, which might be a prerequisite of enhanced cellular activity of GnRH neurons and the subsequent surge release of the neurohormone.Entities:
Keywords: GnRH; gene expression; ion channels; mouse; neurons; proestrus; transcriptome
Year: 2019 PMID: 31213979 PMCID: PMC6554425 DOI: 10.3389/fnmol.2019.00137
Source DB: PubMed Journal: Front Mol Neurosci ISSN: 1662-5099 Impact factor: 5.639
Differentially expressed genes encoding ion channels and regulators of calcium homeostasis in GnRH neurons of proestrous mice.
| 1439204_at | Scn3a | Nav1.3 | Sodium channel, voltage-gated, type III, alpha | 6.23E-03 | |
| 1442333_a_at | Scn9a | Nav1.7 | Sodium channel, voltage-gated, type IX, alpha | 1.10E-02 | |
| 1427280_at | Scn2a1 | Nav1.2 | Sodium channel, voltage-gated, type II, alpha 1 | 3.71E-03 | |
| 1440258_at | Kcnq2 | Kv7.2 | Potassium voltage-gated channel, subfamily Q, member 2 | 2.56E-03 | |
| 1419601_at | Kcnj10 | Kir4.1 | Potassium inwardly rectifying channel, subfamily J, member 10 | 1.46E-02 | |
| 1448690_at | Kcnk1 | K2p1.1 | Potassium channel, subfamily K, member 1 | 2.20E-02 | |
| 1426070_a_at | Kcnd3 | Kv4.3 | Potassium voltage-gated channel, Shal-related family, member 3 | 6.94E-04 | |
| 1450712_at | Kcnj9 | Kir3.3 | Potassium inwardly rectifying channel, subfamily J, member 9 | 2.87E-03 | |
| 1455785_at | Kcna1 | Kv1.1 | Potassium voltage-gated channel, shaker-related subfamily, member 1 | 4.80E-02 | |
| 1459107_at | Kcnh3 | Kv3.3 | Potassium voltage-gated channel, subfamily H (eag-related), member 3 | 3.23E-02 | |
| 1429913_at | Kcnk16 | K2p16.1 | Potassium channel, subfamily K, member 16 | 0.66 | 5.95E-03 |
| 1425437_a_at | Kcnk7 | K2p7.1 | Potassium channel, subfamily K, member 7 | 0.66 | 1.19E-02 |
| 1422871_at | Kcnj12 | Kir.2.2 | Potassium inwardly rectifying channel, subfamily J, member 12 | 0.65 | 1.46E-02 |
| 1422255_at | Kcna4 | Kv1.4 | Potassium voltage-gated channel, shaker-related subfamily, member 4 | 0.65 | 5.98E-03 |
| 1421981_at | Kcnc3 | Kv3.3 | Potassium voltage gated channel, Shaw-related subfamily, member 3 | 0.61 | 1.25E-03 |
| 1418614_at | Kcnj1 | Kir1.1 | Potassium inwardly rectifying channel, subfamily J, member 1 | 0.60 | 7.91E-03 |
| 1441280_at | Kcnk12 | K2p12.1 | Potassium channel, subfamily K, member 12 | 0.59 | 1.14E-02 |
| 1453449_at | Kcnmb4os1 | Potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1 | 0.56 | 3.72E-03 | |
| 1459656_at | Kcng1 | Kv6.1 | Potassium voltage-gated channel, subfamily G, member 1 | 0.55 | 2.01E-03 |
| 1447764_at | Kcnd2 | Kv4.2 | Potassium voltage-gated channel, Shal-related family, member 2 | 0.51 | 3.72E-03 |
| 1455417_at | Kcnj11 | Kir.6.2 | Potassium inwardly rectifying channel, subfamily J, member 11 | 0.50 | 2.86E-02 |
| 1438366_x_at | Clcn3 | Chloride channel 3 | 2.42E-04 | ||
| 1422314_at | Clcn6 | Chloride channel 6 | 2.81E-04 | ||
| 1416656_at | Clic1 | Chloride intracellular channel 1 | 0.61 | 1.79E-02 | |
| 1426108_s_at | Cacnb1 | Calcium channel, voltage-dependent, beta 1 subunit | 4.13E-02 | ||
| 1448656_at | Cacnb3 | Calcium channel, voltage-dependent, beta 3 subunit | 1.04E-02 | ||
| 1433643_at | Cacna2d1 | Calcium channel, voltage-dependent, alpha2/delta subunit 1 | 7.15E-03 | ||
| 1452089_at | Cacnb4 | Calcium channel, voltage-dependent, beta 4 subunit | 2.76E-02 | ||
| 1441966_at | Trpm3 | Transient receptor potential cation channel, subfamily M, member 3 | 7.28E-04 | ||
| 1426330_at | Cacng5 | Calcium channel, voltage-dependent, gamma subunit 5 | 6.23E-03 | ||
| 1425812_a_at | Cacna1b | Cav2,2 | Calcium channel, voltage-dependent, N type, alpha 1B subunit | 9.04E-03 | |
| 1422710_a_at | Cacna1h | Cav3.2 | Calcium channel, voltage-dependent, T type, alpha 1H subunit | 3.86E-02 | |
| 1427306_at | Ryr1 | Ryanodine receptor 1, skeletal muscle | 0.61 | 2.12E-02 | |
| 1425730_at | Cacng6 | Calcium channel, voltage-dependent, gamma subunit 6 | 0.65 | 6.92E-04 | |
| 1426185_at | Cacna2d2 | Calcium channel, voltage-dependent, alpha 2/delta subunit 2 | 0.64 | 1.74E-02 | |
| 1423365_at | Cacna1g | Cav3.1 | Calcium channel, voltage-dependent, T type, alpha 1G subunit | 0.63 | 6.43E-03 |
| 1451864_at | Cacng8 | Calcium channel, voltage-dependent, gamma subunit 8 | 0.39 | 5.34E-05 | |
| 1417504_at | Calb1 | Calbindin 1 | 2.65E-05 | ||
| 1450930_at | Hpca | Hippocalcin | 2.96E-02 | ||
| 1435272_at | Itpkb | Inositol 1,4,5-trisphosphate 3-kinase B | 1.79E-02 | ||
| 1448812_at | Hpcal1 | Hippocalcin-like 1 | 9.06E-03 | ||
| 1433987_at | Hpcal4 | Hippocalcin-like 4 | 3.25E-02 | ||
| 1446539_at | Cab39l | Calcium binding protein 39-like | 0.62 | 1.12E-02 | |
| 1425963_at | Cabp7 | Calcium binding protein 7 | 0.45 | 8.49E-03 | |
| 1447770_at | Cib2 | Calcium and integrin binding family member 2 | 0.22 | 2.32E-03 | |
FIGURE 1Heat map of genes regulated differentially in GnRH neurons of proestrous versus metestrous mice. Expression levels of genes coding ion channels and regulators of calcium homeostasis. The rows represent differentially expressed probe sets with corresponding gene symbols on the right. The expression level of each probe is color coded. For decoding, see the color key. The individual samples are shown as columns. The six metestrous and six proestrous samples are coded in yellow and blue, respectively.
Gene ontology.
| GO:0005244 | Voltage-gated ion channel activity | 31 |
| GO:0005261 | Cation channel activity | 28 |
| GO:0022843 | Voltage-gated cation channel activity | 24 |
| GO:0046873 | Metal ion transmembrane transporter activity | 28 |
| GO:0022857 | Transmembrane transporter activity | 32 |
| GO:0005267 | Potassium channel activity | 17 |
| GO:0005249 | Voltage-gated potassium channel activity | 15 |
| GO:0015077 | Monovalent inorganic cation transmembrane transporter activity | 18 |
| GO:0005262 | Calcium channel activity | 10 |
| GO:0005245 | Voltage-gated calcium channel activity | 8 |
| GO:0005242 | Inward rectifier potassium channel activity | 6 |
| GO:0008331 | High voltage-gated calcium channel activity | 4 |
| GO:0015276 | Ligand-gated ion channel activity | 7 |
| GO:0015272 | ATP-activated inward rectifier potassium channel activity | 3 |
| GO:0005251 | Delayed rectifier potassium channel activity | 4 |
| GO:0031420 | Alkali metal ion binding | 3 |
| GO:0016247 | Channel regulator activity | 5 |
| GO:0005250 | A-type (transient outward) potassium channel activity | 2 |
| GO:0005509 | Calcium ion binding | 8 |
| GO:0044325 | Ion channel binding | 4 |
| GO:0005246 | Calcium channel regulator activity | 3 |
| GO:0030955 | Potassium ion binding | 2 |
| GO:0022841 | Potassium ion leak channel activity | 2 |
| GO:0005247 | Voltage-gated chloride channel activity | 2 |
| GO:0005254 | Chloride channel activity | 3 |
FIGURE 2Predicted interactions among proteins encoded by upregulated ion channel/transport genes in GnRH neurons of proestrous mice. The gene network was constructed by using the STRING 10.5 Known and Predicted Protein–Protein Interactions program (http://string-db.org/). Evidence view, medium confidence. The majority of the proteins (19) form functional clusters belonging to voltage-gated sodium (yellow), potassium (red), and calcium (green) channels. Six proteins represent the non-networking group (Clcn3, Clcn6, Trpm3, Hpcal1, Kcnj9, and Itpkb). Color code of highlighted proteins: red: voltage-gated potassium channel, green: voltage-gated calcium channel, yellow: voltage gated sodium channel, blue: voltage-gated chloride channel. Color code for lines in evidence view: red line – presence of fusion evidence, green line – neighborhood evidence, blue line – co-occurrence evidence, purple line – experimental evidence, light blue line – database evidence, black line co-expression.
FIGURE 3Predicted interactions among proteins encoded by downregulated ion channel/transport genes in GnRH neurons of proestrous mice. The gene network was constructed by using the STRING 10.5 Known and Predicted Protein–Protein Interactions program (http://string-db.org/). Evidence view, medium confidence. It contains 13 networking proteins representing predominantly calcium channel (blue), voltage-gated channel (green), and voltage-gated potassium channel activities (red). The non-networking proteins numbered 6 (Cib2, Cab39l, Kcnk12, Cabp7, Cacng8, and Kcnj11). Color code of highlighted genes: green: voltage-gated channel activity, red: voltage-gated potassium channel activity, blue: calcium channel activity. Color code for lines in evidence view: red line –presence of fusion evidence, green line – neighborhood evidence, blue line – co-occurrence evidence, light blue line – database evidence, black line co-expression.
FIGURE 4Validation of microarray data with quantitative PCR. (A) The qPCR confirmed the differential expression of 7 selected genes. Six showed upregulation (Kcnj10, Trpm3, Calb1, Clcn6, Cacna1b, and Kcnq2), while one gene (Kcnc3) represented the downregulated category. The fold change (FC) values of these genes – gained from the microarray dataset – are also listed. (B) The plot illustrates the correlation between microarray and quantitative PCR data. The coefficient of determination (r2) is 0.7349. Pearson’s product-moment correlation: (r = 0.8685, df = 5; p = 0.0137).