| Literature DB >> 31213767 |
Ahmed A Elhenawy1, L M Al-Harbi2, Gaber O Moustafa3, M A El-Gazzar1, Rehab F Abdel-Rahman4, Abd Elhamid Salim1.
Abstract
Background and aim: Naproxen is a member of the Nonsteroidal anti-inflammatory drugs (NSAIDs). This work aimed to synthesize a safe NSAID agent based on a peptide derivative.Entities:
Keywords: anti-inflammatory and analgesic agents; docking; isothiocyanate; naproxen; peptide candidates
Year: 2019 PMID: 31213767 PMCID: PMC6540076 DOI: 10.2147/DDDT.S196276
Source DB: PubMed Journal: Drug Des Devel Ther ISSN: 1177-8881 Impact factor: 4.162
Chart 1Design of initial hit molecules (5–8) compared with naproxen structure.
Chart 2Design of synthesized compounds (5–20) derived from naproxen.
Scheme 1Synthetic route for naproxoylisothiocyanate (4).
Pharmacokinetic parameters for ligands 5–20
| CPDB | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6 | 6 | 7 | 7 | 6 | 6 | 7 | 7 | 7 | 7 | 8 | 8 | 9 | 9 | 10 | 10 | |
| 3 | 3 | 4 | 4 | 2 | 2 | 3 | 3 | 5 | 5 | 6 | 6 | 3 | 3 | 4 | 4 | |
| 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | |
| 2.69 | 2.32 | 1.66 | 3.92 | 2.96 | 2.58 | 1.92 | 4.18 | 1.54 | 1.17 | 0.51 | 2.77 | 3.49 | 3.12 | 2.46 | 4.72 | |
| −5.51 | −5.06 | −4.98 | −6.65 | −5.92 | −5.48 | −5.39 | −7.06 | −5.77 | −5.33 | −5.24 | −6.91 | −8.14 | −7.70 | −7.61 | −9.28 | |
| 4.79 | 6.20 | 4.38 | 7.47 | 4.86 | 4.42 | 2.81 | 5.61 | 2.52 | 4.86 | 4.06 | 4.95 | 5.83 | 6.03 | 3.84 | 3.87 | |
| 2.42 | 2.42 | 1.39 | 3.34 | 2.50 | 2.51 | 1.48 | 3.43 | 1.32 | 1.32 | 0.29 | 2.25 | 2.66 | 2.66 | 1.63 | 3.59 | |
| 0.65 | 0.70 | 0.76 | 0.75 | 0.59 | 0.65 | 0.72 | 0.67 | 0.58 | 0.63 | 0.84 | 0.74 | 0.57 | 0.96 | 0.75 | 0.77 | |
| 0.85 | 0.80 | 0.93 | 0.89 | 0.65 | 0.65 | 0.92 | 0.83 | 0.68 | 0.50 | 0.90 | 0.85 | 0.68 | 0.66 | 0.57 | 0.66 | |
| 0.61 | 0.59 | 0.55 | 0.56 | 0.68 | 0.61 | 0.52 | 0.50 | 0.61 | 0.57 | 0.57 | 0.59 | 0.6 | 0.51 | 0.68 | 0.58 | |
| 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
| 9.99 | 9.99 | 10.13 | 12.60 | 10.43 | 10.43 | 10.57 | 13.04 | 10.46 | 10.46 | 10.60 | 13.07 | 13.73 | 13.74 | 13.88 | 16.35 | |
| 119.75 | 119.75 | 139.98 | 139.98 | 108.75 | 108.75 | 128.98 | 128.98 | 137.57 | 137.57 | 157.80 | 157.80 | 148.93 | 148.93 | 169.16 | 169.16 | |
| 67.69 | 67.69 | 60.71 | 60.71 | 71.48 | 71.48 | 64.50 | 64.50 | 61.54 | 61.54 | 54.56 | 54.56 | 57.62 | 57.62 | 50.64 | 50.64 | |
| 364.21 | 364.21 | 374.24 | 444.74 | 386.42 | 386.42 | 396.45 | 466.95 | 384.49 | 384.49 | 394.52 | 465.01 | 480.39 | 480.39 | 490.42 | 560.92 | |
| 464.99 | 464.99 | 473.51 | 588.49 | 491.56 | 491.56 | 500.08 | 615.05 | 486.61 | 486.61 | 495.14 | 610.11 | 642.14 | 642.14 | 650.66 | 765.64 | |
| 339.38 | 338.38 | 343.25 | 424.50 | 356.75 | 356.50 | 363.50 | 441.88 | 353.75 | 353.00 | 359.13 | 439.38 | 462.25 | 462.50 | 465.88 | 548.75 | |
| 384.21 | 382.35 | 388.54 | 464.96 | 401.82 | 404.62 | 407.55 | 489.25 | 398.11 | 398.93 | 406.00 | 490.03 | 512.42 | 511.46 | 510.97 | 597.65 | |
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | |
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| 0.86 | 0.93 | 0.66 | 0.62 | 0.55 | 0.63 | 0.62 | 0.58 | 0.59 | 0.58 | 0.63 | 0.61 | 0.60 | 0.58 | 0.63 | 0.64 | |
| 2.37 | 2.48 | 2.64 | 2.34 | 2.54 | 2.66 | 2.46 | 2.51 | 2.48 | 2.50 | 2.41 | 2.39 | 0.47 | ||||
| 0.52 | 0.63 | 0.62 | 0.60 | 0.47 | 0.60 | 0.59 | 0.57 | 0.60 | 0.60 | 0.61 | 0.60 | 0.60 | 0.63 | 0.63 | 0.60 | |
| 0.98 | 0.94 | 0983 | 0.98 | 0.98 | 0.94 | 0.97 | 0.97 | 0.96 | 0.90 | 0.97 | 0.96 | 0.92 | 0.81 | 0.9404 | 0.93 |
Abbreviations: CPDB, Carcinogenic Potency Database; HBDs, hydrogen-bond donors (n); HBAs, hydrogen-bond acceptors (n); DL, drug likeness; V, violation (of Lipinski’s rule of five, n); LogP, partition coefficient; LogS, solubility parameter; MR, molar refractivity; TPSA, topological polar surface area (Å2); Abs, absorption; Vol, volume (A3); VSA, van der Waals surface area; VDW vol, van der Waals volume (A3); ; PgpI, Pgp inhibitor; PgpS, Pgp substrate; BBB, blood–brain barrier (levels: 0 very high, 1 high, 2 medium, 3 low, 4 very low).
Figure 1Scatteplots of docking scores and RMSD for 5–20.
Anti-inflammatory effect of synthesized compounds on carrageenan-induced paw edema in rats after 1, 2, 3, and 4 hours of test-drug administration
| 1 hour | 2 hours | 3 hours | 4 hours | |||||
|---|---|---|---|---|---|---|---|---|
| Edema (%) | Potency (%) | Edema (%) | Potency (%) | Edema (%) | Potency (%) | Edema (%) | Potency (%) | |
| 31.3±1.05b | — | 44.8±2.08b | — | 48.6±1.77b | — | 48.3±1.92b | — | |
| 21.5±2.03a (31.5) | 100 | 22.5±1.22a (49.8) | 100 | 27.6±0.85a (43.2) | 100 | 26.7±1.90a (44.6) | 100 | |
| 21.2±1.66a (32.3) | 102.5 | 30.4±1.19a (32.2) | 64.6 | 33.7±1.68a (30.7) | 71.1 | 32.8±1.40a (32.0) | 71.7 | |
| 24.6±2.39 (21.3) | 67.6 | 31.4±2.46a (29.9) | 60.0 | 35.1±2.99a (27.8) | 64.4 | 35.3±3.06a (26.9) | 60.3 | |
| 24.0±1.90 (23.3) | 73.9 | 28.4±0.78a (36.5) | 73.3 | 29.7±0.95a (38.8) | 89.8 | 30.0±0.95a (38.0) | 85.2 | |
| 17.6±1.55a (43.6) | 138.4 | 19.9±1.50a (55.5) | 111.4 | 21.5±1.42a (55.8) | 129.2 | 20.0±2.02a (58.5) | 131.2 | |
| 30.8±1.09b (1.5) | 4.7 | 42.2±3.50b (5.8) | 11.6 | 44.2±3.94b (9.1) | 21.1 | 41.3±2.99b (14.4) | 32.3 | |
| 30.7±2.38b (2.0) | 6.3 | 42.6±2.45b (4.9) | 9.8 | 46.4±2.61b (4.5) | 10.4 | 44.9±3.34b (7.1) | 15.9 | |
| 24.7±1.79 (21.0) | 66.7 | 30.9±2.05a (31.0) | 62.2 | 41.8±2.81b (14.0) | 32.5 | 41.4±2.59b (14.3) | 32.1 | |
| 27.3±0.88 (12.7) | 40.3 | 37.4±3.58b (16.4) | 32.9 | 39.2±2.42b (19.4) | 44.9 | 42.6±1.61b (11.8) | 26.5 | |
| 25.6±1.96 (18.3) | 26.3 | 29.7±1.92a (33.7) | 67.6 | 30.5±2.70a (37.2) | 86.1 | 33.0±1.49a (31.6) | 70.9 | |
| 27.3±0.88 (12.7) | 40.3 | 37.4±3.58b (16.4) | 32.9 | 39.2±2.42b (19.4) | 44.9 | 42.6±1.61b (11.8) | 26.5 | |
| 19.5±0.50a (37.8) | 120.0 | 23.2±2.05a (48.2) | 96.8 | 30.1±2.58a (38.1) | 88.2 | 31.0±1.68a (35.9) | 80.5 | |
| 17.8±0.40a (43.0) | 136.5 | 20.4±1.45a (54.5) | 120.3 | 20.6±1.56a (57.6) | 133.3 | 19.5±0.61a (59.7) | 133.9 | |
Notes: Values represent means ± SE of six rats for each group. Values in parentheses indicate percentage-inhibition rate. aP<0.05 vs control (LSD followed by Dunnett‘s test); bP<0.05 vs parent compound (LSD followed by Dunnett‘s test). Potency was calculated compared to the reference drug (parent compound). All compounds were dissolved in DMSO (5 mg/kg orally), and the parent compound was also dissolved in DMSO (2.5 mg/kg orally).
Figure 22D view of interactions of the highest-binding interaction compounds (5, 8, 12, and 15) into the active site of COX2 with the lowest RMSD, using the MOE tool.
Figure 33-D view of interactions and distance for compounds (4, 6, 7, 8, 10,and 11) into the hydrophobic surface of the active site of COX2.
Figure 43-D principal component–analysis plot for compounds 5–20.
Notes: x-axis, structure number; y-axis, TPSA; z-axis, ball sizes represent log P-values. Tumorigenicity shown above each ball.
Analgesic activity using tail-flick test for tested compounds
| Latency (seconds) | Potency (%) | ||||
|---|---|---|---|---|---|
| 0 minutes | 30 minutes | 60 minutes | 120 minutes | ||
| 3.2±0.4 | 4.1±0.4b | 4.1±0.3b | 4.0±0.2b | — | |
| 3.5±0.6 | 5.3±0.3a | 6.2±0.4a | 7.0±0.4a | 100 | |
| 3.5±0.2 | 3.9±0.3b | 3.9±0.4b | 3.9±0.2b | 55.7 | |
| 3.4±0.2 | 4.6±0.3 | 4.0±0.2b | 4.2±0.3b | 60.0 | |
| 3.6±0.3 | 3.9±0.4b | 3.6±0.3b | 4.1±0.2b | 58.6 | |
| 3.1±0.1 | 5.0±0.2a | 4.9±0.3a,b | 5.9±0.5a | 84.3 | |
| 3.3±0.3 | 3.7±0.2b | 3.8±0.3b | 4.0±0.3b | 57.1 | |
| 3.4±0.3 | 3.1±0.3b | 4.6±0.4b | 5.7±0.2a,b | 81.4 | |
| 3.4±0.3 | 4.8±0.5a | 4.8±0.4b | 4.8±0.2a,b | 68.6 | |
| 3.4±0.3 | 4.6±0.3 | 4.0±0.4b | 3.8±0.3b | 54.3 | |
| 3.4±0.2 | 3.8±0.2b | 3.4±0.2 | 3.5±0.4b | 50.0 | |
| 3.3±0.3 | 6.1±0.4a | 5.6±0.2a | 5.7±0.3a,b | 81.4 | |
| 3.3±0.3 | 4.2±0.4 | 3.9±0.2b | 4.5±0.3b | 64.3 | |
Notes: Values represent means ± SE of six rats for each group. aP<0.05 vs control (LSD followed by Dunnett’s test); bP<0.05 vs parent compound (LSD followed by Dunnett’s test). All compounds were dissolved in DMSO (5 mg/kg orally), and the parent compound was also dissolved in DMSO (2.5 mg/kg orally).