Literature DB >> 31213173

Reconstruction of long-distance bird migration routes using advanced machine learning techniques on geolocator data.

Mattia Pancerasa1, Matteo Sangiorgio1, Roberto Ambrosini2, Nicola Saino2, David W Winkler3, Renato Casagrandi1.   

Abstract

Geolocators are a well-established technology to reconstruct migration routes of animals that are too small to carry satellite tags (e.g. passerine birds). These devices record environmental light-level data that enable the reconstruction of daily positions from the time of twilight. However, all current methods for analysing geolocator data require manual pre-processing of raw records to eliminate twilight events showing unnatural variation in light levels, a step that is time-consuming and must be accomplished by a trained expert. Here, we propose and implement advanced machine learning techniques to automate this procedure and we apply them to 108 migration tracks of barn swallows ( Hirundo rustica). We show that routes reconstructed from the automated pre-processing are comparable to those obtained from manual selection accomplished by a human expert. This raises the possibility of fully automating light-level geolocator data analysis and possibly analysing the large amount of data already collected on several species.

Entities:  

Keywords:  deep neural network; light-level tag; migratory species; movement ecology; path estimation; random forest

Mesh:

Year:  2019        PMID: 31213173      PMCID: PMC6597775          DOI: 10.1098/rsif.2019.0031

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  8 in total

Review 1.  Global positioning system and associated technologies in animal behaviour and ecological research.

Authors:  Stanley M Tomkiewicz; Mark R Fuller; John G Kie; Kirk K Bates
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-07-27       Impact factor: 6.237

2.  Going wild: what a global small-animal tracking system could do for experimental biologists.

Authors:  Martin Wikelski; Roland W Kays; N Jeremy Kasdin; Kasper Thorup; James A Smith; George W Swenson
Journal:  J Exp Biol       Date:  2007-01       Impact factor: 3.312

Review 3.  Intraclass correlations: uses in assessing rater reliability.

Authors:  P E Shrout; J L Fleiss
Journal:  Psychol Bull       Date:  1979-03       Impact factor: 17.737

4.  Use of long-distance migration patterns of an endangered species to inform conservation planning for the world's largest marine protected area.

Authors:  Graeme C Hays; Jeanne A Mortimer; Daniel Ierodiaconou; Nicole Esteban
Journal:  Conserv Biol       Date:  2014-07-15       Impact factor: 6.560

5.  Flying over an infected landscape: distribution of highly pathogenic avian influenza H5N1 risk in South Asia and satellite tracking of wild waterfowl.

Authors:  Marius Gilbert; Scott H Newman; John Y Takekawa; Leo Loth; Chandrashekhar Biradar; Diann J Prosser; Sivananinthaperumal Balachandran; Mandava Venkata Subba Rao; Taej Mundkur; Baoping Yan; Zhi Xing; Yuansheng Hou; Nyambayar Batbayar; Tseveenmayadag Natsagdorj; Lenny Hogerwerf; Jan Slingenbergh; Xiangming Xiao
Journal:  Ecohealth       Date:  2011-01-26       Impact factor: 3.184

6.  A hidden Markov model for reconstructing animal paths from solar geolocation loggers using templates for light intensity.

Authors:  Eldar Rakhimberdiev; David W Winkler; Eli Bridge; Nathaniel E Seavy; Daniel Sheldon; Theunis Piersma; Anatoly Saveliev
Journal:  Mov Ecol       Date:  2015-10-15       Impact factor: 3.600

7.  Bayesian estimation of animal movement from archival and satellite tags.

Authors:  Michael D Sumner; Simon J Wotherspoon; Mark A Hindell
Journal:  PLoS One       Date:  2009-10-13       Impact factor: 3.240

8.  Effects of geolocators on hatching success, return rates, breeding movements, and change in body mass in 16 species of Arctic-breeding shorebirds.

Authors:  Emily L Weiser; Richard B Lanctot; Stephen C Brown; José A Alves; Phil F Battley; Rebecca Bentzen; Joël Bêty; Mary Anne Bishop; Megan Boldenow; Loïc Bollache; Bruce Casler; Maureen Christie; Jonathan T Coleman; Jesse R Conklin; Willow B English; H River Gates; Olivier Gilg; Marie-Andrée Giroux; Ken Gosbell; Chris Hassell; Jim Helmericks; Andrew Johnson; Borgný Katrínardóttir; Kari Koivula; Eunbi Kwon; Jean-Francois Lamarre; Johannes Lang; David B Lank; Nicolas Lecomte; Joe Liebezeit; Vanessa Loverti; Laura McKinnon; Clive Minton; David Mizrahi; Erica Nol; Veli-Matti Pakanen; Johanna Perz; Ron Porter; Jennie Rausch; Jeroen Reneerkens; Nelli Rönkä; Sarah Saalfeld; Nathan Senner; Benoît Sittler; Paul A Smith; Kristine Sowl; Audrey Taylor; David H Ward; Stephen Yezerinac; Brett K Sandercock
Journal:  Mov Ecol       Date:  2016-04-29       Impact factor: 3.600

  8 in total

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