Literature DB >> 31202241

Vibrational investigation of nucleobases by means of divide and conquer semiclassical dynamics.

Fabio Gabas1, Giovanni Di Liberto1, Michele Ceotto1.   

Abstract

In this work, we report a computational study of the vibrational features of four different nucleobases employing the divide-and-conquer semiclassical initial value representation molecular dynamics method. Calculations are performed on uracil, cytosine, thymine, and adenine. Results show that the overall accuracy with respect to experiments is within 20 wavenumbers, regardless of the dimensionality of the nucleobase. Vibrational estimates are accurate even in the complex case of cytosine, where two relevant conformers are taken into account. These results are promising in the perspective of future studies on more complex systems, such as nucleotides or nucleobase pairs.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31202241     DOI: 10.1063/1.5100503

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Singular value decomposition analysis of the electron density changes occurring upon electrostatic polarization of water.

Authors:  Hajime Torii
Journal:  RSC Adv       Date:  2022-01-19       Impact factor: 3.361

2.  Quantum Anharmonic Calculations of Vibrational Spectra for Water Adsorbed on Titania Anatase(101) Surface: Dissociative versus Molecular Adsorption.

Authors:  Marco Cazzaniga; Marco Micciarelli; Fabio Gabas; Fabio Finocchi; Michele Ceotto
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-07-19       Impact factor: 4.177

3.  Semiclassical Vibrational Spectroscopy of Biological Molecules Using Force Fields.

Authors:  Fabio Gabas; Riccardo Conte; Michele Ceotto
Journal:  J Chem Theory Comput       Date:  2020-05-20       Impact factor: 6.006

4.  Quantum Vibrational Spectroscopy of Explicitly Solvated Thymidine in Semiclassical Approximation.

Authors:  Fabio Gabas; Riccardo Conte; Michele Ceotto
Journal:  J Phys Chem Lett       Date:  2022-02-03       Impact factor: 6.475

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.