Literature DB >> 31201934

Advancements in mapping 3D genome architecture.

Daniel J McKay1, Alexis V Stutzman2, Jill M Dowen3.   

Abstract

Entities:  

Year:  2019        PMID: 31201934      PMCID: PMC7391055          DOI: 10.1016/j.ymeth.2019.06.002

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


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  36 in total

1.  Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.

Authors:  Jessica Zuin; Jesse R Dixon; Michael I J A van der Reijden; Zhen Ye; Petros Kolovos; Rutger W W Brouwer; Mariëtte P C van de Corput; Harmen J G van de Werken; Tobias A Knoch; Wilfred F J van IJcken; Frank G Grosveld; Bing Ren; Kerstin S Wendt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-13       Impact factor: 11.205

2.  Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.

Authors:  Ann Boija; Isaac A Klein; Benjamin R Sabari; Alessandra Dall'Agnese; Eliot L Coffey; Alicia V Zamudio; Charles H Li; Krishna Shrinivas; John C Manteiga; Nancy M Hannett; Brian J Abraham; Lena K Afeyan; Yang E Guo; Jenna K Rimel; Charli B Fant; Jurian Schuijers; Tong Ihn Lee; Dylan J Taatjes; Richard A Young
Journal:  Cell       Date:  2018-11-15       Impact factor: 41.582

Review 3.  Principles of Chromosome Architecture Revealed by Hi-C.

Authors:  Kyle P Eagen
Journal:  Trends Biochem Sci       Date:  2018-04-21       Impact factor: 13.807

4.  Chromatin architecture reorganization during stem cell differentiation.

Authors:  Jesse R Dixon; Inkyung Jung; Siddarth Selvaraj; Yin Shen; Jessica E Antosiewicz-Bourget; Ah Young Lee; Zhen Ye; Audrey Kim; Nisha Rajagopal; Wei Xie; Yarui Diao; Jing Liang; Huimin Zhao; Victor V Lobanenkov; Joseph R Ecker; James A Thomson; Bing Ren
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

5.  Spatial partitioning of the regulatory landscape of the X-inactivation centre.

Authors:  Elphège P Nora; Bryan R Lajoie; Edda G Schulz; Luca Giorgetti; Ikuhiro Okamoto; Nicolas Servant; Tristan Piolot; Nynke L van Berkum; Johannes Meisig; John Sedat; Joost Gribnau; Emmanuel Barillot; Nils Blüthgen; Job Dekker; Edith Heard
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

6.  Hi-C: a comprehensive technique to capture the conformation of genomes.

Authors:  Jon-Matthew Belton; Rachel Patton McCord; Johan Harmen Gibcus; Natalia Naumova; Ye Zhan; Job Dekker
Journal:  Methods       Date:  2012-05-29       Impact factor: 3.608

7.  Architectural protein subclasses shape 3D organization of genomes during lineage commitment.

Authors:  Jennifer E Phillips-Cremins; Michael E G Sauria; Amartya Sanyal; Tatiana I Gerasimova; Bryan R Lajoie; Joshua S K Bell; Chin-Tong Ong; Tracy A Hookway; Changying Guo; Yuhua Sun; Michael J Bland; William Wagstaff; Stephen Dalton; Todd C McDevitt; Ranjan Sen; Job Dekker; James Taylor; Victor G Corces
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582

8.  CTCF Binding Polarity Determines Chromatin Looping.

Authors:  Elzo de Wit; Erica S M Vos; Sjoerd J B Holwerda; Christian Valdes-Quezada; Marjon J A M Verstegen; Hans Teunissen; Erik Splinter; Patrick J Wijchers; Peter H L Krijger; Wouter de Laat
Journal:  Mol Cell       Date:  2015-10-29       Impact factor: 17.970

Review 9.  An Overview of Genome Organization and How We Got There: from FISH to Hi-C.

Authors:  James Fraser; Iain Williamson; Wendy A Bickmore; Josée Dostie
Journal:  Microbiol Mol Biol Rev       Date:  2015-09       Impact factor: 11.056

10.  Comparison of Hi-C results using in-solution versus in-nucleus ligation.

Authors:  Takashi Nagano; Csilla Várnai; Stefan Schoenfelder; Biola-Maria Javierre; Steven W Wingett; Peter Fraser
Journal:  Genome Biol       Date:  2015-08-26       Impact factor: 13.583

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  1 in total

Review 1.  Multi-Scale Organization of the Drosophila melanogaster Genome.

Authors:  Samantha C Peterson; Kaylah B Samuelson; Stacey L Hanlon
Journal:  Genes (Basel)       Date:  2021-05-27       Impact factor: 4.096

  1 in total

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