| Literature DB >> 31201147 |
Leticia de Oliveira1, Liana C L Portugal2, Mirtes Pereira3, Henry W Chase4, Michele Bertocci4, Richelle Stiffler4, Tsafrir Greenberg4, Genna Bebko4, Jeanette Lockovich4, Haris Aslam4, Janaina Mourao-Miranda5, Mary L Phillips4.
Abstract
BACKGROUND: The aim of this study was to apply multivariate pattern recognition to predict the severity of behavioral traits and symptoms associated with risk for bipolar spectrum disorder from patterns of whole-brain activation during reward expectancy to facilitate the identification of individual-level neural biomarkers of bipolar disorder risk.Entities:
Keywords: Biomarkers; Bipolar disorder; Machine learning; Multivariate pattern; Neuroimage; fMRI
Mesh:
Year: 2019 PMID: 31201147 PMCID: PMC6682607 DOI: 10.1016/j.bpsc.2019.04.005
Source DB: PubMed Journal: Biol Psychiatry Cogn Neurosci Neuroimaging ISSN: 2451-9022
Figure 1Multiple kernel learning (MKL) framework. Training phase: (A) the MKL regression model is trained by providing examples that pair a contrast image from the general linear model (brain patterns) and a clinical score. (B) The MKL framework uses a predefined anatomical template to segment the contrast images into 116 anatomical brain regions. (C) The MKL simultaneously learns the contribution of each region for the decision function (region weights or contribution) and within each region the contribution of each voxel (voxel weights). Testing phase: (D) During the testing phase, a new contrast image (brain patterns) of a test subject is given as input for the MKL model. (E) This contrast image is parcellated using anatomical atlas. (F) The MKL regression model is applied to the segmented contrast image to predict the clinical score. (G) The model performance is evaluated using two metrics to measure the agreement between the predicted and the actual clinical scores: Pearson’s correlation coefficient (r) and mean squared error (MSE). AAL, Automated Anatomical Labeling.
Measures of Agreement Between Actual and Predicted Energy-Manic Symptom Severity Based on Patterns of Whole-Brain Activation During Uncertain Reward Expectancy After Controlling for Covariates (Age and Gender) in the First Sample
| MSE | ||||
|---|---|---|---|---|
| Value | .42 | .001 | 9.93 | .001 |
MSE, mean squared error.
Bonferroni correction was used to control for multiple comparisons (21 scales), using a significance threshold of .05/21 = .0024.
Figure 2(A) Scatter plot between the actual and predicted energy-manic symptom scores for the model based on patterns of whole-brain activation during uncertain reward expectancy using a threefold cross-validation scheme. The correlation coefficient (r) and the mean squared error between the actual and predicted energy-manic symptom scores were .42 (p = .001) and 9.93 (p = .001), respectively. For visualization purposes, subjects were color coded according to the categorically defined diagnoses to stress the transdiagnostic nature of these results. Some subjects, however, presented with symptoms that did not meet the threshold for a DSM-5 diagnosis. (B) Weight map showing the contribution of the different brain regions for predicting the energy-manic symptom score from patterns of whole-brain activation during uncertain reward expectancy. The region with the highest contribution according to the multiple kernel learning predictive model was the left ventrolateral prefrontal cortex.
Measures of Agreement Between Actual and Predicted Energy-Manic Symptom Severity Based on Patterns of Bilateral vlPFC Activation and Whole-Brain Activation During Uncertain Reward Expectancy After Controlling for Covariates (Age and Gender) in the Second Sample
| MSE | ||||
|---|---|---|---|---|
| vlPFC | .33 | .009 | 9.37 | .04 |
| Whole Brain | .33 | .01 | 8.61 | .01 |
MSE, mean squared error; vlPFC, ventrolateral prefrontal cortex.
Figure 3(A) Scatter plot between the actual and predicted energy-manic symptom scores for the model based on the pattern of activation within the bilateral ventrolateral prefrontal cortex during uncertain reward expectancy in the second sample. The correlation coefficient (r) and the mean squared error between the actual and predicted energy-manic symptom scores were .33 (p = .009) and 9.37 (p = .04), respectively. (B) Scatter plot between the actual and predicted energy-manic symptom scores for the model based on patterns of whole-brain activation during uncertain reward expectancy in the second sample. The correlation coefficient (r) and the MSE between the actual and predicted energy manic scores were .33 (p = .01) and 8.61 (p = .01), respectively. For visualization purposes, subjects were color coded according to the categorically defined diagnoses to emphasize the transdiagnostic nature of the findings. Some subjects, however, presented with symptoms that did not meet the threshold for a DSM-5 diagnosis.