Literature DB >> 31200946

The Impact of Centromeres on Spatial Genome Architecture.

Héloïse Muller1, José Gil2, Ines Anna Drinnenberg2.   

Abstract

The development of new technologies and experimental techniques is enabling researchers to see what was once unable to be seen. For example, the centromere was first seen as the mediator between spindle fiber and chromosome during mitosis and meiosis. Although this continues to be its most prominent role, we now know that the centromere functions beyond cellular division with important roles in genome organization and chromatin regulation. Here we aim to share the structures and functions of centromeres in various organisms beginning with the diversity of their DNA sequence anatomies. We zoom out to describe their position in the nucleus and ultimately detail the different ways they contribute to genome organization and regulation at the spatial level.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  Hi-C; centromere; chromosome architecture; microscopy; nuclear compartments

Mesh:

Substances:

Year:  2019        PMID: 31200946     DOI: 10.1016/j.tig.2019.05.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  21 in total

1.  Data-Driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization.

Authors:  Yifeng Qi; Alejandro Reyes; Sarah E Johnstone; Martin J Aryee; Bradley E Bernstein; Bin Zhang
Journal:  Biophys J       Date:  2020-09-22       Impact factor: 4.033

Review 2.  The mechanisms and significance of the positional control of centromeres and telomeres in plants.

Authors:  Yuka Oko; Nanami Ito; Takuya Sakamoto
Journal:  J Plant Res       Date:  2020-05-14       Impact factor: 2.629

3.  In situ genome sequencing resolves DNA sequence and structure in intact biological samples.

Authors:  Andrew C Payne; Zachary D Chiang; Paul L Reginato; Edward S Boyden; Jason D Buenrostro; Fei Chen; Sarah M Mangiameli; Evan M Murray; Chun-Chen Yao; Styliani Markoulaki; Andrew S Earl; Ajay S Labade; Rudolf Jaenisch; George M Church
Journal:  Science       Date:  2020-12-31       Impact factor: 47.728

4.  Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins.

Authors:  Takuya Sakamoto; Yuki Sakamoto; Stefan Grob; Daniel Slane; Tomoe Yamashita; Nanami Ito; Yuka Oko; Tomoya Sugiyama; Takumi Higaki; Seiichiro Hasezawa; Maho Tanaka; Akihiro Matsui; Motoaki Seki; Takamasa Suzuki; Ueli Grossniklaus; Sachihiro Matsunaga
Journal:  Nat Plants       Date:  2022-08-01       Impact factor: 17.352

5.  Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence.

Authors:  Zhaoen Yang; Xiaoyang Ge; Weinan Li; Yuying Jin; Lisen Liu; Wei Hu; Fuyan Liu; Yanli Chen; Shaoliang Peng; Fuguang Li
Journal:  BMC Biol       Date:  2021-06-03       Impact factor: 7.431

6.  Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium.

Authors:  Michael F Seidl; H Martin Kramer; David E Cook; Gabriel L Fiorin; Grardy C M van den Berg; Luigi Faino; Bart P H J Thomma
Journal:  mBio       Date:  2020-09-08       Impact factor: 7.867

Review 7.  Decoding the Role of Satellite DNA in Genome Architecture and Plasticity-An Evolutionary and Clinical Affair.

Authors:  Sandra Louzada; Mariana Lopes; Daniela Ferreira; Filomena Adega; Ana Escudeiro; Margarida Gama-Carvalho; Raquel Chaves
Journal:  Genes (Basel)       Date:  2020-01-09       Impact factor: 4.096

Review 8.  Telomeres and Subtelomeres Dynamics in the Context of Early Chromosome Interactions During Meiosis and Their Implications in Plant Breeding.

Authors:  Miguel Aguilar; Pilar Prieto
Journal:  Front Plant Sci       Date:  2021-06-04       Impact factor: 5.753

9.  Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres.

Authors:  Krishnendu Guin; Yao Chen; Radha Mishra; Siti Rawaidah Bm Muzaki; Bhagya C Thimmappa; Caoimhe E O'Brien; Geraldine Butler; Amartya Sanyal; Kaustuv Sanyal
Journal:  Elife       Date:  2020-05-29       Impact factor: 8.140

10.  CenH3 distribution reveals extended centromeres in the model beetle Tribolium castaneum.

Authors:  Tena Gržan; Evelin Despot-Slade; Nevenka Meštrović; Miroslav Plohl; Brankica Mravinac
Journal:  PLoS Genet       Date:  2020-10-30       Impact factor: 5.917

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