| Literature DB >> 31200586 |
Eleni C Mazarakioti1, Amaia Soto Beobide2, Varvara Angelidou3, Constantinos G Efthymiou4, Aris Terzis5, Vassilis Psycharis6, George A Voyiatzis7, Spyros P Perlepes8,9.
Abstract
The goal of this work is to model the nature of the chemical species [CdCl2(extractant)2] that are formed during the solvent (or liquid-liquid) extraction of the toxicEntities:
Keywords: 2-pyridyl ketoximes as cadmium(II) extractants; Raman spectra; cadmium(II); coordination chemistry; model studies for liquid-liquid extraction; phenyl 2-pyridyl ketoxime as ligand; single-crystal X-ray structures
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Year: 2019 PMID: 31200586 PMCID: PMC6631265 DOI: 10.3390/molecules24122219
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structural formulae of the Cd(II) extractants, 2PC12, 2PC14, and the model ligand phenyl 2-pyridyl ketoxime (phpaoH) used in the present work.
Crystallographic data and structural refinement parameters for complexes 1 and 2.
| Parameter | [CdCl2(phpaoH)2]∙H2O(1∙H2O) | {[CdCl2(phpaoH)]}n (2) |
|---|---|---|
| Empirical formula | C24H22CdCl2N4O3 | C12H10CdCl2N2O |
| Formula weight | 597.75 | 381.52 |
| Crystal system | monoclinic | triclinic |
| Space group | ||
| Color | colorless | colorless |
| Crystal size, mm | 0.49 × 0.16 × 0.12 | 0.27 × 0.09 × 0.04 |
| Crystal habit | block-shaped | block-shaped |
| 13.6684 (3) | 7.0792 (1) | |
| 8.8598 (2) | 8.3260 (1) | |
| 20.9270 (4) | 12.3667 (3) | |
| 90.00 | 70.652 (1) | |
| 106.944 (1) | 72.547 (1) | |
| 90.00 | 85.323 (1) | |
| Volume, Å3 | 2424.23 (9) | 655.95 (2) |
|
| 4 | 2 |
| Temperature, K | 160 | 160 |
| Radiation, Å | Cu-Kα (1.54178) | Cu-Kα (1.54178) |
| Calculated density, g∙cm−3 | 1.638 | 1.932 |
| Absorption coefficient, mm−1 | 9.53 | 16.99 |
| No. of measured, independent, and observed [ | 36455, 4072, 3959 | 8385, 2014, 1855 |
|
| 0.047 | 0.065 |
| Number of parameters | 394 | 164 |
| Final | ||
| Goodness-of-fit on | 1.10 | 1.08 |
| Largest differences peak and hole (e Å−3) | 0.62/−1.26 | 0.68/−0.87 |
aR1 = Σ(−/Σ(, wR2 = {Σ[w(2 −2)2]/ Σ[w(2)2]}1/2, w = 1/[σ2(2) + (aP)2 + bP], where P = [max(2,0) + 22]/3 (a = 0.0307 and b = 3.3484 for 1∙H2O; a = 0.0256 and b = 0.1966 for 2).
Figure 2The molecules [CdCl2(phpaoH)2] and H2O that are present in the crystal structure of 1∙H2O. The thermal ellipsoids are presented at the 50% level. Only diagnostic atoms have been numbered. Dashed lines indicate hydrogen bonds in which the symmetry operation is x, y, z. Through the hydrogen bond indicated with the orange color, molecular pairs of the type {[CdCl2(phpaoH)2] − H2O} are formed in the crystal.
Figure 3A small portion of one double chain, formed through hydrogen bonds, in the crystal structure of 1∙H2O. The dashed light green and dashed cyan lines represent the hydrogen bonds O1-H(O1)∙∙∙O1W(x, −1 + y, z) and O11-H(O11)∙∙∙Cl1(x, y, z), respectively. The dashed orange lines represent the hydrogen bonds O1W-HA(O1W)-Cl2(x, y, z) and O1W-HB(O1W)∙∙∙Cl1(−x, 0.5 + y, 0.5 − z). For clarity, only hydrogen atoms involved in hydrogen bonding interactions are shown.
Figure 4Formation of layers parallel to the (001) plane through π-π stacking interactions (dashed dark green lines) in the crystal structure of 1∙H2O (see text for details). The view is presented along the b axis. The color code for the hydrogen bonds is the same as used in Figure 3.
Figure 5A small portion of one zigzag chain formed parallel to the ‘a’ axis in the crystal structure of 2. The thermal ellipsoids are presented at the 50% level. The dashed cyan and light green lines represent O1-H(O1)∙∙∙Cl2 hydrogen bonds and C-H-π interactions [C3-Cg1 3.502(5) Å, C3-H(C3) 0.950(4) Å, H(C3)∙∙∙Cg1 2.952(1) Å, C3-H(C3)∙∙∙Cg1 118.4(3)°], respectively; C3 is a 2-pyridyl carbon atom and Cg1 is the centroid of the phenyl ring of phpaoH. Symmetry codes: (‘) –x + 2, −y + 2, −z + 1; (‘’) x + 1, y, z; (‘’’) –x + 3, −y + 2, −z + 1; (‘’’’) x + 2, y, z; (*) –x + 1, −y + 2, −z + 1; (**) –x, y, z; (***) –x, −y + 2, −z + 1.
Figure 6Formation of layers parallel to the (001) plane through π-π stacking interactions (dashed dark green lines) in the crystal structure of 2. The C-H∙∙∙π interactions are not shown for clarity reasons. The color code for the hydrogen bonds is the same as used in Figure 5.
Selected bond lengths (Å) and angles (°) for complex[CdCl2(phpaoH)2]∙H2O (1∙H2O).
|
|
| ||
| Cd1-Cl1 | 2.532(1) | Cd1-N12 | 2.373(2) |
| Cd1-Cl2 | 2.534(1) | N2-O1 | 1.387(3) |
| Cd1-N1 | 2.323(2) | N12-O11 | 1.381(3) |
| Cd1-N2 | 2.509(2) | C6a-N2 | 1.286(3) |
| Cd1-N11 | 2.405(2) | C26a-N12 | 1.278(3) |
|
|
| ||
| N1-Cd1-N2 | 69.8 (1) | N11-Cd1-N12 | 67.3 (1) |
| N1-Cd1-N11 | 105.3 (1) | N11-Cd1-Cl1 | 149.4 (1) |
| N1-Cd1-N12 | 166.2 (1) | N11-Cd1-Cl2 | 87.3 (1) |
| N1-Cd1-Cl1 | 102.1 (1) | N12-Cd1-Cl1 | 83.0 (1) |
| N1-Cd1-Cl2 | 92.3 (1) | N12-Cd1-Cl2 | 98.9 (1) |
| N2-Cd1-N11 | 80.2 (1) | Cl1-Cd1-Cl2 | 105.0 (1) |
| N2-Cd1-N12 | 98.9 (1) | C6a-N2-O1 | 112.9 (2) |
| N2-Cd1-Cl1 | 98.1 (1) | C26a-N12-O11 | 115.6 (2) |
| N2-Cd1-Cl2 | 152.3 (1) |
a Atoms C6 and C26 (not labeled in Figure 2) are the oxime carbon atoms.
Selected interatomic distances (Å) and angles (°) for complex {[CdCl2(phpaoH)]}n (2)a.
|
|
| ||
| Cd1∙∙∙Cd1’ | 3.871 (1) | Cd1-Cl2* | 2.686 (1) |
| Cd1∙∙∙Cd1* | 3.978 (1) | Cd1-N1 | 2.407 (4) |
| Cd1-Cl1 | 2.564 (1) | Cd1-N2 | 2.323 (3) |
| Cd1-Cl1’ | 2.682 (1) | C6b-N1 | 1.293 (5) |
| Cd1-Cl2 | 2.575 (1) | N1-O1 | 1.386 (4) |
|
|
| ||
| N1-Cd1-N2 | 67.6(1) | Cl1-Cd1-Cl2 | 112.6(1) |
| N1-Cd1-Cl1 | 160.1(1) | Cl1-Cd1-Cl2* | 87.5(1) |
| N1-Cd1-Cl1’ | 101.4(1) | Cl1’-Cd1-Cl2 | 93.1(1) |
| N1-Cd1-Cl2 | 86.1(1) | Cl1’-Cd1-Cl2* | 168.4(1) |
| N1-Cd1-Cl2* | 88.7(1) | Cl2-Cd1-Cl2* | 81.8(1) |
| N2-Cd1-Cl1 | 97.8(1) | Cd1-Cl1-Cd1’ | 95.1(1) |
| N2-Cd1-Cl1’ | 83.3(1) | Cd1-Cl2-Cd1* | 98.3(1) |
| N2-Cd1-Cl2 | 152.0(1) | C6b-N1-O1 | 114.5(4) |
| N2-Cd1-Cl2* | 106.2(1) | Cd1-N1-O1 | 123.9(2) |
| Cl1-Cd1-Cl1’ | 84.9(1) | Cd1-N1- C6b | 120.5(3) |
a Symmetry codes: (‘) −x + 2, −y + 2, −z + 1; (*) −x + 1, −y + 2, −z + 1. b Atom C6 (not labeled in Figure 5) is the oxime carbon atom.
Hydrogen bonding interactions (Å, deg) in the crystal structure of [CdCl2(phpaoH)2]∙H2O (1∙H2O).
| D-H∙∙∙A | d(D∙∙∙A) | d(D-H) | d(H∙∙∙A) | <DHA | Symmetry Code of A |
|---|---|---|---|---|---|
| O11-H(O11)∙∙∙Cl1 | 3.098(2) | 0.77(4) | 2.38(4) | 155(3) | x, y, z |
| O1W-HA(O1W)∙∙∙Cl2 | 3.122(3) | 0.80(5) | 2.33(5) | 174(4) | x, y, z |
| O1W-HB(O1W)∙∙∙Cl1 | 3.241(2) | 0.85(4) | 2.41(5) | 165(4) | −x, 0.5+y, 0.5−z |
| O1-H(O1)∙∙∙O1W | 2.623(3) | 0.76(3) | 1.87(3) | 170(3) | x, −1+y, z |
D = donor; A = acceptor.
Hydrogen bonding interactions (Å, deg) in the crystal structure of {[CdCl2(phpaoH)]}n (2).
| D-H∙∙∙A | d(D∙∙∙A) | d(D-H) | d(H∙∙∙A) | <DHA | Symmetry Code of A |
|---|---|---|---|---|---|
| O1-H(O1)∙∙∙Cl2 | 3.379(3) | 0.84 | 2.69 | 140 | x, y, z |
| O1-H(O1)∙∙∙Cl1* | 3.378(3) | 0.84 | 2.74 | 133 | −x + 1, −y + 2, −z + 1 |
D = donor; A = acceptor.
Figure 7The FT-Raman spectra of compounds phpaoH, 1∙H2O, and 2.