| Literature DB >> 31199083 |
Inn-Chi Lee1,2, Tung-Ming Chang3,4, Jao-Shwann Liang5, Shuan-Yow Li2,6.
Abstract
BACKGROUND: Epilepsy caused by a KCNQ2 gene mutation usually manifests as neonatal seizures during the first week of life. The genotypes and phenotypes of KCNQ2 mutations are noteworthy.Entities:
Keywords: zzm321990KCNQ2zzm321990; childhood epilepsy; epileptic encephalopathy; phenotypes
Mesh:
Substances:
Year: 2019 PMID: 31199083 PMCID: PMC6625149 DOI: 10.1002/mgg3.816
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Seven of the 131 patients had identified KCNQ2mutatoins. The clinical and familial histories are summarized
| Patient number | Patient 1 | Patient 2 | Patient 3 | Patient 4 | Patient 5 | Patient 6 | Patient 7 |
|---|---|---|---|---|---|---|---|
| Genotype | c.1627 G>A | c.1294 C>T | c.387+1 G>T | c.740 C>T | c.1741 C>T | c.853 C>A | c.860 C>T |
| Protein change | p.(Val543Met) | p.(Arg432Cys) | Splicing | p.(Ser247Leu) | (p.Arg581*) | p.(Pro285Thr) | p.(Thr287Ile) |
| Family mutation | Father and two aunts | Father | Mother | De novo | Mother and sister | De novo | De novo |
| Sex | Female | Female | Male | Male | Female | Female | Male |
| Other genetic study |
| Panel |
| Whole exon | Panel | Whole exon |
|
| Family number of seizures other than index patient ( | 3 | 1 | 1 | 0 | 2 | 0 | 0 |
| Later seizures older than 3 years from familial | 0 | 2 | 0 | 1 | 1 | 1 | 1 |
| Age at first seizure | Day 14 | 1 year (febrile seizure) | Day 3 | Day 3 | Day 3 | Day 2 | Newborn |
| Seizure type | General tonic | General tonic | General clonic | General tonic | General tonic | General tonic | General tonic |
| Seizure frequency before drug control | + | + | +++ | +++ | +++ | +++ | +++ |
| Drug control | OXC | OXC, TOP | PB, OXC | Intravenous PB, PHT then changed to PB, SAB, CLN | PB | Intravenous PB, PHT then changed to oral PB, SAB, CLN, OXC | TOP, OXC |
| Seizure frequency after 6‐months drugs |
|
|
|
|
|
|
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| Abnormal MRI | No | No | No | Basal ganglion | No | Thin corpus callosum | No |
| Dev. Del./Int. Dis. | No | Mild(ADHD) | No | Severe | No | Severe | Severe |
The sequence data of each patient were checked against the GenBank reference sequence and version number of KCNQ2 gene (NM_172107.3).
Abbreviations: NA, not available; VOUS, variance of unknown significance; PHT, phenytoin; OXC, oxcarbazepine; VPA, valproic acid; TOP, topiramate; PB, phenobarbital; KEP, levetiracetam; SAB, vigabatrin; CLN, clonazepam; MRI, magnetic resonance imaging; EEG, electroencephalography; +++, daily; ++, weekly; +, less than weekly; ADHD, attention deficit and hyperactivity; Dev. Del./Int. Dis., Developmental delay/intellectual disability.
Genotypes and phenotypes in seven KCNQ2 mutations
| Genotype ( | Phenotype | Severity | NCBI ClinVar | Functional domain | Global MAF | East Asia MAF | Cont. in Taiwan ( | FATHMM predict | Poly Phen2 | SIFT | ACMG score | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c.387+1 G>T | Splicing | BFNC | + | Pathogenic | S2 | 0 | 0 | 0 | PVS1, PM2, PP4 | |||
| c.740C>T p.(Ser247Leu) | Missense | EE | +++ | Pathogenic | S5 | 0 | 0 | 0 | D | D | D | PS2, PM1, PM2,PP3, PP4 |
| c.853C>A p.(Pro285Thr) | Missense | EE | +++ | Novel | Pore domain | 0 | 0 | 0 | D | D | D | PS2, PM1,PM2, PP3, PP4, PM5 |
| c.860C>T p.(Thr287Ile) | Missense | EE | +++ | VOUS | Pore domain | 0 | 0 | 0 | D | D | D | PS2, PM1, PM2, PP4, PP3 |
| c.1294C>T p.(Arg432Cys) | Missense | CSWS | + | VOUS | C‐terminal | 4.53E−05 | 0 | 0 | D | D | D | PM2, PP3 |
| c.1627G>A p.(Val543Met) | Missense | BFNC | + | VOUS | Calmodulin | 0 | 0 | 0 | D | D | D | PS3, PM2, PP3, PP4 |
| c.1741 C>T (p.Arg581*) | Nonsense | BFNC | + | Pathogenic | C‐terminal | 0 | 0 | 0 | PVS1, PM2, PP4 |
The sequence data of each patient were checked against the GenBank reference sequence and version number of KCNQ2 gene (NM_172107.3).
Abbreviations: BFNC, benign familial neonatal convulsions; EE, neonatal‐onset epileptic encephalopathy; CSWS, continuous spikes and waves during slow‐wave sleep; NCBI ClinVar: National Center for Biotechnology Information, clinical variability and predictability (https://www.ncbi.nlm.nih.gov/clinvar); Cont, Control of healthy adults without seizures; Global MAF: global mutation allele frequency in EXAC browser; East Asia MAF: East Asia mutation allele frequency in EXAC browser; VOUS, variant of uncertain significance; FATHMM predict: Functional Analysis Through Hidden Markov Models prediction; D, damage; T, tolerant. ACMG, American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
Figure 1Seven mutation variants associated with KCNQ2 functional domains. CaM: calmodulin domain
Figure 2The pedigrees in seven index families are shown
Figure 3Sanger sequencing shows that patient 4 has a de novo c.740C>T p.(Ser247Leu) mutation (right lower, arrow), and an interictal EEG shows multiple focal spikes (left upper). The EEG improved after the patient turned 6 months old (left lower). His MRI shows hyperdensities (right upper, arrow) in his bilateral basal ganglia. He had frequent (>10 per day) neonatal seizures
Figure 4Patient 6 has a de novo c.853C>A p.(Pro285Thr) mutation (left lower) and an EEG that shows neonatal epileptic encephalopathy with burst‐suppression (left upper). Her EEG improved and her seizures attenuated after 2 months. The MRI shows a thin corpus callosum (right upper, arrows, and right lower)
Figure 5Patient 6’s amplitude‐integrated EEG monitor showed many seizures (arrows) with unique low‐voltage fast activity arising from the left hemisphere followed by rhythmic theta and delta rhythms and postictal extremely low‐voltage activity during ictal recordings