| Literature DB >> 31198195 |
Ruixue Wang1, Jing He1, Qi Xi1, Yuting Jiang1, Linlin Li1, Ruizhi Liu1, Hongguo Zhang1.
Abstract
BACKGROUND Genetic defects are commonly observed in infertile males, although the majority of cases remain idiopathic. In recent years, the relationship between single-nucleotide polymorphisms (SNPs) and male infertility has received increasing attention. The objective of this study was to explore the relationship between non-obstructive azoospermia (NOA) and single-nucleotide polymorphisms in the angiotensin-converting enzyme gene (ACE) using ligase detection reaction (LDR)-PCR. MATERIAL AND METHODS A retrospective study was performed and we screened 4 ACE SNPs (rs4316, rs4331, rs4343, and rs4362) in 121 NOA cases and 256 control subjects by LDR-PCR. The relationship between SNPs and NOA was analyzed. RESULTS ACE SNPs were in Hardy-Weinberg equilibrium (P=0.089 for rs4331, P=0.089 for rs4343, P=0.089 for rs4316, and P=0.381 for rs4362). The allelic and genotypic frequencies of the 4 SNPs were not significantly different between cases and controls (P=0.123 for rs4331, P=0.123 for rs4343, P=0.123 for rs4316, and P=0.179 for rs4362). Haplotype analysis showed the existence of 3 haplotypes, TGAC, CAGT, and TGAT, which showed statistical significance of 0.889, 0.889, and 0.781, respectively, between cases and controls. CONCLUSIONS No significant association was found between ACE SNPs rs4316, rs4331, rs4343, or rs4362 and NOA in the Chinese Han population of Northeast China.Entities:
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Year: 2019 PMID: 31198195 PMCID: PMC6589046 DOI: 10.12659/MSM.917286
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Primers of target genes used in the PCR.
| Primer name | Sequence (5-3′) | PCR length | |
|---|---|---|---|
| rs4331 | TGCAGAACACCACTATCAAG | GAGCCACACACCTCCTCCA | 96 |
| rs4343 | GTGAGCTAAGGGCTGGA | CCAGCCCTCCCATGCCCATAA | 109 |
| rs4316 | TTCCTGCTGCTCTGCTACG | TGGGTGACTGTCACCTGTTG | 74 |
| rs4362 | GGAACTGGAACTGGATGATG | TGGGGCCCAGTGGCACAAG | 100 |
Target gene probe sequences of LDR.
| Probe name | Sequence (5′-3′) | LDR length |
|---|---|---|
| rs4331_modify | P-GCTGCCCGTTCTAGGTCCTGTTTTTTTTTTTTTTTTTTTTT-FAM | |
| rs4331_A | TTTTTTTTTTTTTTTTTTCCTCCAGCTCCTGGGCAGGCAGT | 82 |
| rs4331_G | TTTTTTTTTTTTTTTTTTTTCCTCCAGCTCCTGGGCAGGCAGC | 84 |
| rs4343_modify | P-GTGGCCATCACATTCGTCAGTTTTTTTTTTTTTTTTTTTTTTTT-FAM | |
| rs4343_A | TTTTTTTTTTTTTTTTTTTTACAGGTCTTCATATTTCCGGGAT | 87 |
| rs4343_G | TTTTTTTTTTTTTTTTTTTTTTACAGGTCTTCATATTTCCGGGAC | 89 |
| rs4316_modify | P-GGGACCAGCAGAGGGTGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-FAM | |
| rs4316_C | TTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTTGGGATGCCTCCTGGCTG | 102 |
| rs4316_T | TTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTTGGGATGCCTCCTGGCTA | 104 |
| rs4362_modify | P-AAGTACCTGGAGCAGAGCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-FAM | |
| rs4362_C | TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACTGGATGATGAAGCTGACG | 112 |
| rs4362_T | TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACTGGATGATGAAGCTGACA | 114 |
Clinical characteristics of control subjects and cases.
| Variables | Patients (121) | Controls (256) | |
|---|---|---|---|
| Age (years) | 30.00±5.69 | 25.35±5.51 | <0.001 |
| BMI (kg/m2) | 25.31±5.13 | 22.89±3.83 | <0.001 |
| pH | 7.48±0.41 | 7.51±0.06 | 0.314 |
| Sperm density (106/mL) | 0 | 66.88±11.11 | <0.001 |
| Sperm volume (mL) | 2.74±1.49 | 3.69±1.29 | <0.001 |
| Fructose (μmol/eja) | 66.47±57.96 | 20.40±12.88 | <0.001 |
| Alpha-glucosidase (mIU/eja) | 41.25±43.95 | 30.32±18.99 | 0.004 |
| Seminal plasma zinc (μmol/eja) | 7.45±5.31 | 2.91±2.88 | <0.001 |
| FSH (mIU/mL) | 19.42±11.62 | 3.35±1.58 | <0.001 |
| LH (mIU/mL) | 9.17±5.20 | 4.96±2.05 | <0.001 |
| PRL (μIU/mL) | 305.11±168.37 | 409.28±215.19 | <0.001 |
| E2 (pg/mL) | 35.46±25.32 | 34.21±11.85 | 0.520 |
| T (nmol/L) | 12.46±6.90 | 17.72±6.43 | <0.001 |
| INHB (pg/mL) | 51.90±84.52 | 200.93±71.27 | <0.001 |
P<0.05 has statistical significance.
Genotypes and dominant/recessive model analysis of NOA-associated SNPs.
| dbsnp code | Cases (n=121) | Controls (n=256) | OR (95% CI) | |||
|---|---|---|---|---|---|---|
| n (%) | MAF% | n (%) | MAF% | |||
| A A | 14 | (153) 63.20 | 42 | (321) 62.70 | 0.978 (0.712~1.342) | 0.889 |
| A G | 61 | 107 | ||||
| G G | 46 | 107 | ||||
| A>G | 60 (24.80) | 149 (29.10) | 0.799 (0.489~1.239) | 0.123 | ||
| GG+AG/AA | 107/14 | 214/42 | 0.987 (0.956~1.019) | 0.417 | ||
| GG/AG+AA | 46/75 | 107/149 | / | / | ||
| A A | 46 | (153) 63.20 | 107 | (321) 62.70 | 1.022 (0.745~1.404) | 0.889 |
| A G | 61 | 107 | ||||
| G G | 14 | 42 | ||||
| G>A | 60 (24.80) | 149 (29.10) | 0.799 (0.489~1.239) | 0.123 | ||
| AA+AG/GG | 107/14 | 214/42 | 0.987 (0.956~1.019) | 0.417 | ||
| AA/AG+GG | 46/75 | 107/149 | / | / | ||
| C C | 14 | (153) 63.20 | 42 | (321) 62.70 | 0.978 (0.712~1.342) | 0.889 |
| C T | 61 | 107 | ||||
| T T | 46 | 107 | ||||
| C>T | 60 (24.80) | 149 (29.10) | 0.799 (0.489~1.239) | 0.123 | ||
| TT+CT/CC | 107/14 | 214/42 | 0.987 (0.956~1.019) | 0.417 | ||
| TT/CT+CC | 46/75 | 107/149 | / | / | ||
| C C | 40 | (143) 59.10 | 96 | (308) 60.20 | 0.957 (0.700~1.306) | 0.780 |
| C T | 63 | 116 | ||||
| T T | 18 | 44 | ||||
| T>C | 58 (23.97) | 140 (27.34) | 1.303 (0.807~2.106) | 0.179 | ||
| CC+CT/TT | 103/18 | 212/44 | 0.986 (0.953~1.020) | 0.408 | ||
| CC/CT+TT | 40/81 | 96/160 | 0.090 (0.000~) | 0.415 | ||
Binary logistic regression analysis;
P<0.05 has statistical significance.
Figure 1Haplotype analysis of NOA-associated SNPs in chromosome 17. [ACE c.81C>T (rs4316), ACE c.471A>G (rs4331), ACE c.606G> A (rs4343), and ACE c.1665T> C (rs4362)]. Red squares indicate a complete chain.
Haplotype analysis of NOA-associated SNPs (rs4316, rs4331, rs4343, rs4362).
| Haplotype | Cases frequency(%) | Controls frequency(%) | P value |
|---|---|---|---|
| TGAC | 59.1 | 59.8 | 0.860 |
| CAGT | 36.8 | 36.9 | 0.971 |
| TGAT | 4.1 | 2.9 | 0.389 |
P<0.05 has statistical significance.